FastQCFastQC Report
Fri 1 Sept 2023
SRR13808099_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808099_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5027072
Total Bases794.2 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA348150.6925502558944849No Hit
CCCGGCTGCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTT253690.5046476358405052No Hit
CCTGTCTCGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC236020.469497950297907No Hit
CCCCTGTCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT164260.32675084025054746No Hit
CCCTGTCTGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA149190.2967731514487956No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG119160.23703658909202013No Hit
TCCCGGCTCCGGGAATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCT103580.20604439323725618No Hit
CCCGGAGCCTCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTC84210.1675130175179508No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTG82170.1634549893059021No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA76050.15128090466975608No Hit
CCCCGGCTCCGGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCT70030.13930574298518106No Hit
GCTGTCTCCATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC66060.13140850180781177No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC64700.128703149666446No Hit
CCCGGAGCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTGCG59530.11841883307022458No Hit
TCCCCTGTGGGAATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTA55480.11036245353159851No Hit
CCGGCTGTCCGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTA52270.10397702678616896No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)