FastQCFastQC Report
Fri 1 Sept 2023
SRR13808100_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808100_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2509315
Total Bases396.4 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG109580.436692882320474No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA99040.3946893873427609No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG74130.29541926780814687No Hit
GCGTAATCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA73510.29294847398592844No Hit
GCGTAATCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG72500.28892347114650807No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC69640.27752593835369416No Hit
TCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA68550.2731821234081811No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC63210.2519014153264935No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG57030.22727318013083253No Hit
GCGTAATCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC50580.2015689540771087No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG48390.19284147267282106No Hit
GCGTAATCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC46510.18534938817964267No Hit
TCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC45160.17996943388932835No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA45010.17937166119040454No Hit
CCTGTCTCGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC43670.17403155841335186No Hit
GCGTAATCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG43150.1719592797237493No Hit
GCTGTCTCCTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC41550.16558303760189536No Hit
TCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC41540.16554318608863375No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC39040.15558030777323692No Hit
TCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG37650.15004094742987628No Hit
CCCGGAGCCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT35140.14003821760121787No Hit
CCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC29770.11863795497974547No Hit
CCCTGTCTGGTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATA28850.11497161575967944No Hit
CCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC28270.11266022799050737No Hit
GCGTAATCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC27910.11122557351309023No Hit
TCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC26310.10484933139123627No Hit
GCGTCTGTACGCTCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA25460.10146195276400133No Hit
TCTGTCTCATCGAGAGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC25230.10054536795898483No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)