FastQCFastQC Report
Fri 1 Sept 2023
SRR13808101_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808101_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4282144
Total Bases676.5 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG638501.4910754986287242No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA589991.3777911251933612No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC404300.9441532092335055No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC367640.8585418892965766No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG329160.7686803619868925No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC227910.5322333858926743No Hit
CCCGGAGCCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT192970.45063874545087695No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG172820.4035828781096572No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA162950.3805336765881764No Hit
CCCTGTCTGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA157410.36759623216781123No Hit
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG138460.3233426993580786No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA132350.30907414603525707No Hit
CCTGTCTCGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC128460.29998991159568666No Hit
CCCGGCTGCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTT124700.2912092633970273No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG121890.2846471300357951No Hit
TCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA115140.2688839982961806No Hit
CCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC112100.26178475081641345No Hit
CCCGGAGCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTGCG106890.24961794839220727No Hit
CTGTCTCTATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA101980.23815172960087286No Hit
CCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC99590.23257041332566114No Hit
CCCGGAGCCTCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTC99180.23161294902740312No Hit
CCCCTGTCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT97580.2278765029854204No Hit
CCCGGAGCTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG96340.22498075730288378No Hit
CCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG91530.21374806638917326No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC89780.2096613285307547No Hit
CCCGGAGCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA86810.20272555056532426No Hit
CCGGAGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC79840.1864486574949371No Hit
TCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC79110.1847439039882825No Hit
CCCGGAGCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACCAG79000.18448702332289618No Hit
CCCGGAGCGTACCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGG78370.1830157976938655No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTG78280.182805622604004No Hit
CCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG75890.1772243063287923No Hit
TCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC71890.16788319122383555No Hit
CCCGGAGCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTA71320.1665520823213792No Hit
TCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG66370.1549924523789952No Hit
CCCGGAGCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGGCGACG65440.15282064311709273No Hit
CCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC62570.14611839302928628No Hit
CCCGGAGCCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAG62400.14572139563732558No Hit
CCCGGAGCCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACC61450.14350288079989837No Hit
CCCGGAGCGTACCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGT59690.1393927901537174No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGATC54370.12696910706412487No Hit
CCCGGAGCCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGC54210.12659546245992662No Hit
CCCCGGAGCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT52770.12323266102214217No Hit
CCGGCTGTCCGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTA50080.11695076111405875No Hit
CCGGAGCGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC49740.11615676633013741No Hit
CCCGGAGCACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGG45980.10737611813147806No Hit
TCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC45200.1055546006860115No Hit
CCGGAGCGCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT43110.10067386804367157No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)