FastQCFastQC Report
Fri 1 Sept 2023
SRR13808103_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808103_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2951991
Total Bases466.4 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA980333.320911208740135No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG852602.888220187663174No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC607642.058407359643034No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC536091.8160285719028275No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG497921.6867260096660186No Hit
GAGCGTAAGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG374161.2674835390758306No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC361341.2240552223905832No Hit
GAGCGTAAAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA354291.2001730357579004No Hit
CCCGGAGCCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT286450.9703620370116305No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG254070.8606733557114504No Hit
GAGCGTAAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC240300.8140268720331464No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA229840.7785931596674922No Hit
GAGCGTAAACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC217100.7354358465185022No Hit
GAGCGTAAATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG201050.6810657620568626No Hit
CCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC160020.5420748233988518No Hit
CCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC143910.4875014862850192No Hit
CCCGGAGCTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG137450.4656179507322346No Hit
GAGCGTAACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC133980.45386317234707013No Hit
CCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG132020.447223585708764No Hit
CCCGGAGCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA129640.4391612305051066No Hit
CCCGGAGCAGATTACGCTCCGGGCGATCGATCGACACTAGTTAGCGTGCG119820.4058955464295115No Hit
GAGCGTAACCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT116220.3937003872979288No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG113780.3854347794420782No Hit
TCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA104090.35260947611290144No Hit
CCCGGAGCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTA103850.35179646550412924No Hit
CCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC90070.30511610638379316No Hit
CCCGGAGCCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAG90020.3049467291736323No Hit
CCCGGAGCCGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACC90010.30491285373160015No Hit
CCCGGAGCGTACCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGG89870.3044385975431497No Hit
CCCGGCTGCCGGGCGATCGATCGACACTAGTTAGCGTGCGGCTGTCTCTT89860.3044047221011175No Hit
GCTGTCTCCCGATCGATCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC85440.28943177672289655No Hit
CCCGGAGCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACCAG83140.28164042505549647No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGATCGATCGACACTAGTTAGCGTG78530.2660238462786641No Hit
CCCCGGAGCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT76910.2605360246694519No Hit
CCCGGAGCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGGCGACG76480.25907938066206837No Hit
CCCGGAGCCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGC73910.25037339205979964No Hit
GAGCGTAAAGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACCAG73120.24769723213925787No Hit
CCCGGAGCGATTACGCTCCGGGCGATCGATCGACACTAGTTAGCGTGCGG71630.2426497912764639No Hit
TCCCGGAGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC71330.24163352801549867No Hit
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG68600.23238553234071513No Hit
CCCGGAGCACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGG68260.23123376731162118No Hit
TCCCGGAGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC65820.22296815945577073No Hit
CCCCTGTCGGGCGATCGATCGACACTAGTTAGCGTGCGGCTGTCTCTTAT65110.22056300307148635No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAT64700.21917410994816716No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA64350.2179884694770411No Hit
TCCCGGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG59560.2017621327436296No Hit
GAGCGTAAAGATTACGCTCCGATCGATCGACACTAGTTAGCGTGCGGCTG57220.19383527930810088No Hit
CCCGGAGCGTACCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGT57100.1934287740037148No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGATC56010.1897363508222078No Hit
GAGCGTAAGTACCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGT54130.18336776772015903No Hit
GAGCGTAAGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA52290.177134686386239No Hit
GAGCGTAATACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG51050.17293413157424936No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGATCGATCGACACTAGTTAGC50690.17171461566109109No Hit
GAGCGTAAGATTACGCTCCGATCGATCGACACTAGTTAGCGTGCGGCTGT49420.16741243452300497No Hit
GAGCGTAAGTACCAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGG46980.1591468266671545No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC44410.1504408380648857No Hit
GAGCGTAAAGATTACGCTCCGGCGACGTACCAGATTACGCTCCGGCGACG44230.14983108010830656No Hit
CCCGGAGCATTACGCTCCGGGCGATCGATCGACACTAGTTAGCGTGCGGC42260.14315761802796825No Hit
GAGCGTAAGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTA42260.14315761802796825No Hit
CCCCGGAGAGATTACGCTCCGGGGCGATCGATCGACACTAGTTAGCGTGC41670.14115896694806995No Hit
TCCCGGAGCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC41310.13993945103491168No Hit
CCCGGAGCGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTAC40850.13838118070143166No Hit
GCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG40020.1355695190127612No Hit
CCGGAGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC39630.13424837677350643No Hit
GAGCGTAACTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAG37190.12598276891765592No Hit
CCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG36570.12388249151166111No Hit
GAGCGTAACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACC36330.12306948090288893No Hit
GCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA36010.12198546675785936No Hit
CCCGGAGCCTCCGGCGACGTACCAGATTACGCTCCGGCGACGTACCAGAT35730.12103695438095848No Hit
CCCCGGAGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGG34880.11815754180822366No Hit
CCCGGAGCGATTACGCTCCGGCGACGTACCAGATTACGCTCCGGCGACGT34640.11734453119945149No Hit
CCCGGAGCCCAGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACC34450.11670089780084018No Hit
TCCCGGAGCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGAT34390.11649764514864713No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGATCGATCGACACTAGTTA34200.11585401175003582No Hit
CCCCGGAGGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACGTACCA34070.11541363100361757No Hit
GAGCGTAACGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGC32840.11124695163366013No Hit
CCCGGAGCGATTACGCTCCGACGTACCAGATTACGCTCCGACGTACCAGA32300.10941767776392272No Hit
CCCCGGCTCCGGGGCGATCGATCGACACTAGTTAGCGTGCGGCTGTCTCT31470.10660601607525226No Hit
GAGCGTAAATTACGCTCCGATCGATCGACACTAGTTAGCGTGCGGCTGTC29640.10040681018336438No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)