FastQCFastQC Report
Fri 1 Sept 2023
SRR13808104_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808104_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6352394
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length158
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTT568480.8949067076129094No Hit
CCCGGAGCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCG532020.8375110234031454No Hit
GTCTCTTACGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACACA416540.6557212918468219No Hit
CCCGGAGCCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTC360600.5676600034569644No Hit
CCCCTGTCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTAT358270.5639920949487706No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTG253420.39893621208004415No Hit
CTGTCTCTATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA213770.3365187990543408No Hit
CCCTGTCTGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA192850.30358633296360393No Hit
CCTGTCTCGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC166770.2625309450263948No Hit
CCCGGAGCGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCGG157910.24858344743729685No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG129100.20323046712782614No Hit
CCCCGGCTCCGGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT127210.20025521087010661No Hit
TCCCGGCTCCGGGAATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT125770.19798834895946318No Hit
CCCCGGAGAGATTACGCTCCGGGGATCGTCTCCGACACTAGTTAGCGTGC107910.16987296442884367No Hit
CCCCGGAGCTCCGGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCT99690.156932961022254No Hit
CCGGCTGTCCGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTA95650.15057315399517096No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA89810.14137976957978363No Hit
CCCCCTGTGGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTA87420.13761740849197956No Hit
CCTGGAGCCTCCAGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTC86830.1366886247924798No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGC78160.12304022703881402No Hit
GCTGTCTCCATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC77700.12231609059513626No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC74570.11738881435880708No Hit
GCCCGGCTCCGGGCATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT67820.10676289915266592No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)