FastQCFastQC Report
Fri 1 Sept 2023
SRR13808105_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13808105_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences323604
Total Bases51.1 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGTCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT182445.637754786714626No Hit
CCCTGTCTGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA112903.4888320292703425No Hit
CCCGGAGCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCG53511.6535642328277773No Hit
CCCGGCTGCCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTT52771.630696777542923No Hit
CCCCCTGTGGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA47371.4638261578966887No Hit
CCCGGAGCCCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCGTG39541.2218637594096489No Hit
TCCCCTGTGGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA39291.2141382677593602No Hit
TCCCTGTCGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT37081.1458449215708089No Hit
CCCCGGAGAGATTACGCTCCGGGGCTAGCTCACGACACTAGTTAGCGTGC35361.0926935390168229No Hit
CCTGTCTCGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATAC28530.8816331071309379No Hit
GCTGTCTCCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATAC28400.8776158514727878No Hit
CCGGCTGTCCGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA23160.7156895464827382No Hit
CCCCGGCTCCGGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCT22100.6829334618855144No Hit
TCCCGGCTCCGGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCT21510.6647013015908332No Hit
CCCCGGAGCCAGATTACGCTCCGGGGCTAGCTCACGACACTAGTTAGCGT20460.632254236659621No Hit
CCCGGAGCCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTC19470.6016612897244781No Hit
TCCCGGAGAGATTACGCTCCGGGACTAGCTCACGACACTAGTTAGCGTGC18350.567051087131185No Hit
CCCGGAGCGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCGG17700.5469648088404346No Hit
CTGTCTCTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATACA16790.518844019233384No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG12530.38720164151246583No Hit
TCCCGGAGCCAGATTACGCTCCGGGACTAGCTCACGACACTAGTTAGCGT12330.38102124819223493No Hit
CCCCGGAGCTCCGGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCT12220.37762203186610793No Hit
CCCCGGAGGATTACGCTCCGGGGCTAGCTCACGACACTAGTTAGCGTGCG11830.36557026489165767No Hit
TCCTGTCTGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA10360.3201443739879606No Hit
GCCCCTGTGGGCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA10080.3114918233396373No Hit
GAGCTGTCCTCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT9750.30129417436125633No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA8870.27410044375224035No Hit
TCCCGGAGCTCCGGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCT8440.26081259811374397No Hit
CCGGAGCGAGATTACGCTCCGGCTAGCTCACGACACTAGTTAGCGTGCGG8410.25988553911570933No Hit
GCCCTGTCGGCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT7710.23825416249490117No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC7360.22743847418449709No Hit
CCTGGCTGCCAGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTT7250.22403925785837012No Hit
GCCTGTCTGCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA6520.20148082223952732No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGC6470.19993572390946962No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCTA6320.19530042891929641No Hit
CCCGGAGCATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCGGC6160.1903561142631117No Hit
TCCCGGAGGATTACGCTCCGGGACTAGCTCACGACACTAGTTAGCGTGCG6000.18541179960692697No Hit
CCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG5960.18417572094288082No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC5750.17768630795663837No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC5340.16501650165016502No Hit
GCTGTCTCCCGAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATAC5070.1566729706678533No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTA4990.15420081333976093No Hit
TCCGGCTGCCGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTT4860.15018355768161085No Hit
CCCGGAGCGCTCCGGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCT4610.14245806603132222No Hit
GAGGCTGTCCTCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA4560.1409129677012645No Hit
CCTGGAGCCTCCAGGCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTC4470.13813179070716058No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG4300.13287845638496434No Hit
GCCCGGCTCCGGGCCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCT4220.13040629905687198No Hit
GCCCGGAGAGATTACGCTCCGGGCCTAGCTCACGACACTAGTTAGCGTGC4200.1297882597248489No Hit
TCCCCCTGGGGGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTT4140.12793414172877962No Hit
ACCCTGTCGGTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT4120.12731610239675653No Hit
CCGGAGCGCCAGATTACGCTCCGGCTAGCTCACGACACTAGTTAGCGTGC4090.1263890433987219No Hit
TCTGTCTCACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATAC4020.12422590573664108No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCTAG3980.1229898270725949No Hit
ACCTGTCTGTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTATA3960.1223717877405718No Hit
AGGCTGTCCCTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTAT3880.11989963041247945No Hit
CCCCGGAGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA3860.11928159108045636No Hit
ACCCCTGTGGGTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA3780.11680943375236401No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCTAGC3590.11093806009814465No Hit
CCCGGAGCTACCAGATTACGCTCCGGGCTAGCTCACGACACTAGTTAGCG3490.10784786343802918No Hit
AAGGCTGTCCTTCTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA3450.10661178477398303No Hit
TCCCGGAGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG3430.10599374544195993No Hit
CCCCGGAGATTACGCTCCGGGGCTAGCTCACGACACTAGTTAGCGTGCGG3360.10383060777987912No Hit
TCGGCTGTCCGACTAGCTCACGACACTAGTTAGCGTGCGGCTGTCTCTTA3310.1022855094498214No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)