FastQCFastQC Report
Wed 28 Jun 2023
SRR1382092.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1382092.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40972587
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length40-51
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA7023541.7142046705520448No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACAAAAAAAA4739181.1566709224389469No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAAAAAAAAAA4532821.10630554033603No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAAAAAAAAAA3332550.8133608941998219No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACAAAAAAAA2694100.6575371967603607No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA2471730.603264324022303No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAA2380560.5810128611112596No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA2014510.4916726395626422No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAAAAAAAA1679870.40999851925386116No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAA1513280.3693396270047581No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAAAAAAA1466460.35791247450398966No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAA1444700.35260160653268No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAAAAAAAAAAAA1371150.3346505799109048No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAAAAAA1337850.3265231946423105No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGAAAAAAAAAA1083450.2644328999777339No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAAAAAAAAAAAA940320.22949978726019912No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA936110.22847227098449996No Hit
GGGGGGGGGATGCGTGCATTTATCAGATAAAAAAAAAAAA874880.21352813284648098No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAA864780.21106307004729774No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAAAAAAAAAA844250.2060524027931163No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA840880.20522990164130958No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACAAAAAAAA791830.19325848279973143No Hit
ATAGCTCAGTCGGTAGAGCATCAGAAAAAAAAAAAAAAAA746100.18209736182877592No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA741270.1809185248663942No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTAAAAAAA731660.1785730542228149No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA718130.175270846334404No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGAAAAAAAA717260.1750585092418011No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAAAAAAAA713110.17404563690352284No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAA687740.1678536920307229No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACAAAAAAA635620.15513299172444248No Hit
GGGGGGGGATGCGTGCATTTATCAGATAAAAAAAAAAAAA608240.1484504749480427No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCAAAAAAAAA545980.13325494921763179No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAA538540.13143910097744133No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAA524790.12808319865182055No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA499710.12196203280988822No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGAAAA499640.12194494821623052No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGAAAAA491310.11991188157096354No Hit
GTGTAATGGTTAGCACTCTGGACTAAAAAAAAAAAAAAAA484210.1181790156428248No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAA475640.11608737324787424No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCAAAAAAAAA472610.11534785440811925No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTAAAAAAAAA470810.11490853628549254No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCAAAAAA459860.11223601770617998No Hit
ATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA457230.11159412511589761No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAAA456720.11146965164782004No Hit
GGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCAAAAAAA446550.10898750425497906No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGAAAAAAAAAA433380.10577315999109355No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCAAAAAAAAAA433210.1057316688350677No Hit
TGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA410420.10016941327136604No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)