FastQCFastQC Report
Wed 28 Jun 2023
SRR1382097.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1382097.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124044265
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA72802695.869089554442521No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA52976844.270801233737005No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA26631732.146953750743737No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA22735001.8328134718682882No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA20474991.6506196396907185No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA15437161.244488005954971No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA13716681.1057891310009373No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAA12800651.0319421055056435No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAAAAAAAAAA9682020.7805294343918278No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA8940590.720758029401843No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAAAAAAAAAA7533870.607353350838106No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA7172370.5782105283142271No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAA6984060.5630296571953569No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAA5709180.4602534425916426No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA4425790.3567911825669651No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAAAAAAAAAAAA4331790.3492132425469247No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAA4113350.3316033998024818No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAAAAAAAAAAAA4075840.32857947926895287No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAAAAAAAA4025920.32455510942001226No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACAAAAAAAA3994510.3220229488239541No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3721070.29997920500395564No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA3611700.29116219117425546No Hit
TTGCGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAA3500430.28219200621649054No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAA3450560.2781716671867095No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAA3128560.2522131917989115No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAA3083320.24856610662330902No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAA2913780.23489840501695103No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGTTAAAAAAAA2721500.21939748685680874No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA2652890.21386639680601116No Hit
TTGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA2573510.20746706830823658No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCAAAAAAAAAAAAAAA2549660.2055443675691093No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAAA2484300.20027528076368545No Hit
TTGCGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAA2398880.19338902931143168No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA2348450.18932354510706317No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAAA2223020.17921183216330075No Hit
ATGCGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAA2211550.1782871622480894No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCACGAAAAAAAAAAAA1964010.15833138275276168No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAA1958420.15788073717071885No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA1953340.1574712059441039No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAA1947410.15699315079177584No Hit
TCTGCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1937090.15616118971723522No Hit
TTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAA1905270.15359597640406833No Hit
TGCGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAAA1877850.1513854751769459No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGAAAAA1841010.1484155676201556No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCAAAAA1821440.14683790500108973No Hit
TGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAAAAA1759220.1418219536388885No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGTTAAAAAAAA1649770.13299849049853293No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA1634950.13180375569962868No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGACAAAAAAAAAA1622630.1308105618587042No Hit
TTCTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAA1582420.12756897709055715No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1548470.1248320508811915No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA1532180.12351880999899512No Hit
CGCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA1471720.11864474347121168No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1452860.11712431848421208No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAA1427210.11505650825533932No Hit
TCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAA1418930.11438900460251024No Hit
CCTGCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1385240.11167303865277448No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAA1352080.10899979938613043No Hit
ATGCGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAA1348220.10868862014700963No Hit
ATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA1330170.10723349443039548No Hit
TGCGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAAA1305710.10526161769752113No Hit
TCTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAAA1302610.10501170690962616No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA1281000.10326958686884881No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA1253900.10108488288434778No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAAAA1247200.10054475311696191No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAA1242700.10018197939259828No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)