FastQCFastQC Report
Thu 29 Jun 2023
SRR1382099.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1382099.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143359418
Total Bases5.7 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA78161705.452149645306177No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA60880034.246671118600663No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAA24291261.6944307070219828No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA21539921.5025116801185674No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA21482441.4985021772340064No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA20789341.4501551617627242No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA19479001.358752725963215No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA19314641.3472878356690874No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA8290570.5783066167302661No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAA7086750.4943344566312344No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAA7028800.49029216901536243No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAAAAAAAAAA6905410.48168513072507035No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAA6278660.437966342748406No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAA6137780.4281392939248679No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAA5895380.41123074313820107No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAAAAAAAAAA5786060.40360515414480824No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAA5396620.37643986529018975No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA5207730.36326389104062906No Hit
TTGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA5047130.3520612785969876No Hit
TGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAAAAA4544100.3169725479772804No Hit
TTGCGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAA4042410.2819772887191827No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAAAAAAAAAAAA3675660.25639473508465277No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAAAAAAAAAA3606910.2515990961961076No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3532340.2463974846772885No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAAAAAAAAAAAA3511530.24494588838244305No Hit
TTGCGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAA3450520.24069015123931378No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA3311080.23096354925213214No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA3278360.228681173914922No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAA3270410.2281266236725375No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA3228910.225231801652543No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAAAAAAAA3096980.21602905781885917No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACAAAAAAAA2933590.2046318296297771No Hit
TGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAAAAA2873130.20041445759775614No Hit
TTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAA2860520.1995348502321626No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGTTAAAAAAAA2795520.19500079164662903No Hit
ATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA2750570.1918653157478639No Hit
TGCGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAAA2547460.17769742898928342No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGAAAAA2506710.17485492302989122No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCAAAAA2490850.173748612735021No Hit
ATGCGTGCATTTATCAGATCAAAACCAACCAAAAAAAAAA2411650.168224036735417No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAA2375390.16569472959216394No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCAAAAAAAAAAAAAAA2307990.16099325961270297No Hit
TGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA2287150.1595395706754334No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAAA2254990.15729625799680633No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACAAAAAAAA2140620.14931840752869127No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGTTAAAAAAAA2047720.1428381914887517No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAAAA2047540.14282563563420717No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCACGAAAAAAAAAAAA1954040.13630356674578575No Hit
CCTGCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1951380.13611801911751623No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA1901010.13260447248746504No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACAAAAAAAA1885350.1315121131420888No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA1856190.12947806470587095No Hit
ATGCGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAA1855080.1294006369361795No Hit
TTCTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAA1834820.12798740575244244No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAA1816370.1267004306616256No Hit
TGCGTGCATTTATCAGATCAAAACCAACAAAAAAAAAAAA1805720.12595754260107278No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1787560.12469079638702217No Hit
GCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAA1775800.12387048055677793No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGACAAAAAAAAAA1775380.12384118356284063No Hit
TCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAA1768890.12338847525176198No Hit
TCTGCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1714900.1196224164358703No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA1705510.11896741935712937No Hit
TCTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAAA1702640.11876722323189118No Hit
TGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAAAA1650160.11510649408467884No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAA1644120.11468517540996157No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1561240.10890390193966887No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA1534850.10706307415394223No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAA1534710.10705330848929646No Hit
TTCCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGGAAA1474430.10284849231182007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)