FastQCFastQC Report
Thu 7 Sept 2023
SRR13919662_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919662_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3715420
Total Bases104.1 Mbp
Sequences flagged as poor quality0
Sequence length20-68
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGATATAAAGCTTATGTTTATATA207990.5598021219673684No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT187500.5046535788686071No Hit
TGGTGATTAATAATAACTTATCGAATCGCA107670.2897922711295089No Hit
TGGTGATTAATAATAACTTATCGAATCGCAT86130.23181766798908332No Hit
TAGAGGGAATTAGAATATAATAAGGAT80800.21747204892044505No Hit
CCCCCACAACGGAAGGGGTGTATTTATTATA71530.19252197598118112No Hit
TGGCGAGCATGCCTGTTCGTCATT62370.16786796647485344No Hit
CTGCCGACGTCTTCCTGGACGAGGTTGG49480.13317471510623294No Hit
TGGTGATTAATAATAACTTATCGAATAGCA44800.12057856177767252No Hit
TGAACGGCATGCGCGGGCTCGATATGCA42730.1150071862669631No Hit
TTCTAGAGGGAATTAGAATATAATAAGGATT41680.1121811262252989No Hit
TTCTAGAGGGAATTAGAATATAATAAGGA39440.10615219813641527No Hit
TTCTAGAGGGAATTAGAATATAAT38510.10364911638522697No Hit
TGGTGATTAATAATAAATTATCGAATAGCA38140.10265326665625958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)