FastQCFastQC Report
Wed 6 Sept 2023
SRR13919664_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919664_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4036372
Total Bases126.7 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGATATAAAGCTTATGTTTATATA338990.8398383498845002No Hit
TGGATATAAAGCTTATGTTTATATA138340.34273352406567087No Hit
ATATATAAGTATATAAAGAGACTACTACC97090.24053778987665164No Hit
TTTCTAGAGGGAATTAGAATATAATAAGGAT92350.2287945709662043No Hit
ATATATATAAGTATATAAAGAGACTACTACC73930.18315953039016225No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT69600.1724320751407452No Hit
TAACGGATCTAAATAATATACCGAAACCTTGTCCA55980.13868890181578902No Hit
TCTAGAGGGAATTAGAATATAATAAGGAT55340.13710331951564425No Hit
TTTCTAGAGGGAATTAGAATATAATAAGGA51650.12796144656637198No Hit
GGGGTACTCAGACGGAAAAATTCGCCCAAA47280.11713489242319587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)