FastQCFastQC Report
Wed 6 Sept 2023
SRR13919665_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919665_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4211964
Total Bases119.6 Mbp
Sequences flagged as poor quality0
Sequence length20-68
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTGATTAATAATAACTTATCGAATCGCA139600.3314368308940912No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT129680.3078848727102131No Hit
TAGAGGGAATTAGAATATAATAAGGAT98090.2328842316790932No Hit
TGGCGAGCATGCCTGTTCGAGCGTCATTGCGTCATT66860.15873829880787205No Hit
TAGAGGGAATTAGAATATAATAAGGA58860.13974478414345423No Hit
GGCCCGAGTTGTAATTTGGTCATT56850.13497266358401924No Hit
CCCCCACAACGGAAGGGGTGTATTTATTATA55750.1323610553176618No Hit
TGGTGATTAATAATAACTTATCGAATAGCA55170.13098402550449148No Hit
TGGCGAGCATGCCTGTTCGAGCGTCATTGGGG52180.12388519939866532No Hit
TGGTGATTCATAATGGCGAGCATGCCTGTTCGAGCGTCATT49070.1165014705728729No Hit
GGCCCGAGTTGTAATTTGATT48520.11519566643969417No Hit
TGGCGAGCATGCCTGTTCGAGCGTCATTCGAGCGTCATT46390.11013864316029291No Hit
TTCTAGAGGGAATTAGAATATAATAAGGA44230.10501039420090011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)