FastQCFastQC Report
Thu 7 Sept 2023
SRR13919666_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919666_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6748184
Total Bases201 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGATATAAAGCTTATGTTTATATA2345643.475957383497545No Hit
TTTCTAGAGGGAATTAGAATATAATAAGGAT268900.3984775755966346No Hit
TTGGATATAAAGCTTATGTTTATATAT243590.3609711886931358No Hit
ATATATAAGTATATAAAGAGACTACTACC178340.264278508114183No Hit
ATATATATAAGTATATAAAGAGACTACTACC170830.2531495880965901No Hit
TGGATATAAAGCTTATGTTTATATA168800.25014137136746717No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT151460.22444556935614085No Hit
TCTAGAGGGAATTAGAATATAATAAGGAT125310.18569440311645324No Hit
TTTCTAGAGGGAATTAGAATATAATAAGGA115450.17108306471785595No Hit
ATATATAAGTATATAAAGAGACTACTACCA102050.15122587054532005No Hit
ATGGATATAAAGCTTATGTTTATATA95220.14110462903797527No Hit
ATATATATAAGTATATAAAGAGACTACTACCA86940.12883466129554264No Hit
TAAGGCTGTGTTCAGGTCGCAGTC77970.11554219624124061No Hit
GGGGTACTCAGACGGAAAAATTCGCCCAAA72650.10765859377871144No Hit
TTTAACTTAAAGTGAAGGCAAATCCTT69170.10250165081450062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)