FastQCFastQC Report
Thu 7 Sept 2023
SRR13919668_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919668_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3617634
Total Bases101.1 Mbp
Sequences flagged as poor quality0
Sequence length20-68
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGATATAAAGCTTATGTTTATATA165480.45742604144034477No Hit
CCCCCACAACGGAAGGGGTGTATTTATTATA135080.37339321777714385No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT80450.2223829165692273No Hit
CCCCCACATCGGAAGGGGTGTATTTATTATA53100.1467810176485515No Hit
TAGAGGGAATTAGAATATAATAAGGAT52900.14622817012445152No Hit
TGGTGATTAATAATAACTTATCGAATCGCAT51130.14133546953616646No Hit
TGGTGATTAATAATAACTTATCGAATCGCA50830.14050619825001645No Hit
CTGCCGACGTCTTCCTGGACGAGGTTGG45570.12596630836618627No Hit
TGGAGATAGGGTTTAATCACCCTGAAA44280.12240044183574127No Hit
CCCCCACAACGGAAGGGGTGTATTTATTATAT37660.10410118878803108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)