FastQCFastQC Report
Thu 7 Sept 2023
SRR13919670_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919670_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2357364
Total Bases79.8 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTAGAGGGAATTAGAATATAATAAGGAT181660.770606490978907No Hit
ATATATATAAGTATATAAAGAGACTACTACC91070.3863213317926294No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT77390.3282904125116019No Hit
TCTAGAGGGAATTAGAATATAATAAGGAT64680.2743742587059105No Hit
TTTACCTTAAGATATTTCTTAAATATACGTAAG56580.2400138459737232No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTGAGCGTCATT54950.2330993431646534No Hit
TTTCTAGAGGGAATTAGAATATAATAAGGA52690.2235123638097468No Hit
AAATTCTGTATACATATTGATAATGACAATATGT41720.1769773357020808No Hit
ACGACCAGCGAATCCCTGGTGTTGTATGTGTCATT40180.170444615256702No Hit
ATATATATAAGTATATAAAGAGACTACTACCA39580.16789939949876218No Hit
GGGGTACTCAGACGGAAAAATTCGCCCAAA37780.16026375222494277No Hit
ATATATAAGTATATAAAGAGACTACTACC33850.1435925890104371No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCGAGCGTCATT27860.11818285169367142No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTTTTGAACGCACATTGCGCTC27510.11669814250153986No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTGCGTCATT25790.10940185732877909No Hit
TTGGATATAAAGCTTATGTTTATATA25490.1081292494498092No Hit
TTCTGGCGAGCATGCCTGTTCGAGCGTCATTGAGCGTCATT23740.10070570348915144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)