FastQCFastQC Report
Thu 7 Sept 2023
SRR13919671_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919671_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1638389
Total Bases55.7 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTAGAGGGAATTAGAATATAATAAGGAT135930.8296564491094606No Hit
ATATATATAAGTATATAAAGAGACTACTACC63230.3859278840373074No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT57230.34930654441649694No Hit
TCTAGAGGGAATTAGAATATAATAAGGAT49040.2993184158340907No Hit
TTTACCTTAAGATATTTCTTAAATATACGTAAG39600.2417008414973489No Hit
TTTCTAGAGGGAATTAGAATATAATAAGGA37970.2317520442336954No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTGAGCGTCATT37440.22851715923385718No Hit
AAATTCTGTATACATATTGATAATGACAATATGT31730.19366585102805256No Hit
ATATATATAAGTATATAAAGAGACTACTACCA28240.17236443848194782No Hit
ACGACCAGCGAATCCCTGGTGTTGTATGTGTCATT28170.17193718951970502No Hit
GGGGTACTCAGACGGAAAAATTCGCCCAAA26980.16467395716157762No Hit
ATATATAAGTATATAAAGAGACTACTACC24930.1521616661244674No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTTTTGAACGCACATTGCGCTC21540.13147060923870948No Hit
TTGGATATAAAGCTTATGTTTATATA18860.11511307754141416No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCGAGCGTCATT18280.11157301471140249No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTGCGTCATT17350.10589670707017687No Hit
AGGGGACAATTTTTCTAGAGTTTTATGTA16430.10028143499498593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)