FastQCFastQC Report
Wed 6 Sept 2023
SRR13919677_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919677_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8776499
Total Bases289.3 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACGGATCTAAATAATATACCGAAACCTTGTCCA205630.23429615841122983No Hit
TTTCTGGCGTGCATGCCTGTTCGAGCGTCATT187350.21346780760756653No Hit
ATACATTAAGACGACCTCTTCTTCAAATCT184870.2106420794897829No Hit
AGATAAGCCAGTGAGGGCCAGACTAGT128750.14669858675993697No Hit
ACATACGACCATACCCACTGGAAAACTC125870.1434170960425108No Hit
ATATATAAGTATATAAAGAGACTACTACC121290.13819861427660393No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT119770.13646671639796232No Hit
ATAGATAAGCCAGTGAGGGCCAGACTAGT117740.13415372120477653No Hit
TAACGGATCTAAATAATATACCGAAACCTTGTCCAT113540.12936821390853004No Hit
ATATATAAGTATATAAAGAGACTACTACCA98740.1125049977217567No Hit
ACATACGACCATACCCACTGGAAAACT93940.10703584652604642No Hit
TCTGGCGAGCATGCCTATTCGAGAGTCATT92040.10487097417774445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)