FastQCFastQC Report
Wed 6 Sept 2023
SRR13919678_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919678_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2477173
Total Bases83.3 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACGGATCTAAATAATATACCGAAACCTTGTCCA76510.3088601401678446No Hit
ATACATTAAGACGACCTCTTCTTCAAATCT52900.21354988125577018No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT47350.19114530959283021No Hit
ATATATAAGTATATAAAGAGACTACTACC46520.18779471599278694No Hit
ATATATAAGTATATAAAGAGACTACTACCA40190.16224139371775811No Hit
TAACGGATCTAAATAATATACCGAAACCTTGTCCAT37800.15259329889353712No Hit
AGATAAGCCAGTGAGGGCCAGACTAGT37400.1509785549899018No Hit
ATAGATAAGCCAGTGAGGGCCAGACTAGT36050.1455287943151326No Hit
ACATACGACCATACCCACTGGAAAACTC31040.12530412692210033No Hit
AACTTCTCGAATCGCATGGCGAGCATGCCTGTTCGAGCGTCATT29040.11723040740392375No Hit
ACATACGACCATACCCACTGGAAAACT26240.10592720007847654No Hit
ATATATATAAGTATATAAAGAGACTACTACC25910.10459503635797743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)