FastQCFastQC Report
Sat 9 Sept 2023
SRR13919681_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13919681_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1358007
Total Bases45.6 Mbp
Sequences flagged as poor quality0
Sequence length20-67
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACATTAAGACGACCTCTTCTTCAAATCT74350.5474934959834522No Hit
TAACGGATCTAAATAATATACCGAAACCTTGTCCA62080.45714050074852336No Hit
ATATATAAGTATATAAAGAGACTACTACCA27360.20147171553607604No Hit
ATAGATAAGCCAGTGAGGGCCAGACTAGT27350.20139807821314618No Hit
ATATATAAGTATATAAAGAGACTACTACC25760.18968974386729967No Hit
TAACGGATCTAAATAATATACCGAAACCTTGTCCAT24440.17996961724055915No Hit
AAGACGACCTCTTCTTCAAATCT22290.1641375928106409No Hit
ACATACGACCATACCCACTGGAAAACTC22040.1622966597373946No Hit
AACTTCTCGAATCGCATGGCGAGCATGCCTGTTCGAGCGTCATT21210.15618476193421685No Hit
ACATACGACCATACCCACTGGAAAACTCGGGATC21010.15471201547561977No Hit
ACATACGACCATACCCACTGGAAAACTCGGGATCC20310.14955740287053013No Hit
TTCTAGAGGGAATTAGAATATAATAAGGAT16570.12201704409476534No Hit
AGATAAGCCAGTGAGGGCCAGACTAGT14800.10898323793618148No Hit
ACTGGTGATTCATAATAACTTCTCGAATCGCATGGCGAGCATGCCTGTTC13600.1001467591845992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)