FastQCFastQC Report
Wed 13 Sept 2023
SRR14189733_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14189733_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45289508
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGTTGACTCTGAATAAAGCAGTTTACTGTCAAACTGTAGGCACCATCA10019702.2123667141625827No Hit
CCATAAGGCCGGGGTTCGATTCCCCGCAACGGAACTGTAGGCACCATCAA4416640.9752015853208208No Hit
CTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTAACTGTAGGCACCATCAA2908820.6422723779644505No Hit
CTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCAACTGTAGGCACCATCA2448470.5406263190141081No Hit
CTCCAGTTGGTACGTCTGGTTCAGGGTTGTTTAACTGTAGGCACCATCAA1814900.4007329909611736No Hit
CCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAACTGTAGGCACCATCA1410130.3113590900567964No Hit
TTGTTGACTCTGAATAAAGCAGTTTACTGTCAAACTGTAGGCACCATCAA1395720.30817733767388245No Hit
CTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTAACTGTAGGCACCAT1343710.29669344166865314No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATAAA1264770.2792633560956326No Hit
TTGTTGACTCTGAATAAAGCAGTTTACTGTCAGAACTGTAGGCACCATCA1192400.26328393763959634No Hit
CCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAACTGTAGGCACCATCA1149800.25387778555686674No Hit
TCCAGTTGGTACGTCTGGTTCAGGGTTGTTTAACTGTAGGCACCATCAAT1053350.23258146235547536No Hit
CCACGCGGCCCGGGTTCGATTCCCGGCATGGGAACTGTAGGCACCATCAA1034620.2284458466627635No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCCC987750.21809687135484007No Hit
GTTTGTTGACTCTGAATAAAGCAGTTTACTGTCAAACTGTAGGCACCATC946700.2090329618948389No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATATA937630.20703029054764738No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTAA935640.2065908951804025No Hit
CAGAAGGTCGCTGGTTCGATTCCAGCATGAGGAACTGTAGGCACCATCAA929970.20533894958629273No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATAAC926480.20456835168092355No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATACA909640.20085005118624824No Hit
TACCCCAACGCAAGGCGGGGTGCAATTATTAGAAACTGTAGGCACCATCA859960.18988062312357204No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATAAT827620.18273989640161248No Hit
TCCGTTGTGGTCTAGTGGTTAGGATTTATGGAACTGTAGGCACCATCAAT827340.18267807192782928No Hit
TGTTGACTCTGAATAAAGCAGTTTACTGTCAGAACTGTAGGCACCATCAA805300.17781160263432316No Hit
TTTGTTGACTCTGAATAAAGCAGTTTACTGTCAGAACTGTAGGCACCATC800180.17668109797085893No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTTA787180.17381067597378183No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCAC777220.1716114911206366No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATACC768050.1695867396042368No Hit
CCGTTGTGGTCTAGTGGTTAGGATTTATGGCTAACTGTAGGCACCATCAA766810.16931294550605408No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTAC766760.16930190542144993No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCAA717750.1584804144924692No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTCC690840.15253864095851957No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTAT682390.15067286666041946No Hit
CCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAACTGTAGGCACCATCA671370.14823963201366638No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATATC667010.14727693663618513No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTTT666940.14726148051773935No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTCA658730.1454486986257391No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATACG641580.14166194960651815No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCGC622540.13745788538926057No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATATT620800.1370736904450364No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTTC613320.13542209378825665No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATAAG601830.13288508234622465No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCCA600450.1325803760111503No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCCT594790.13133063843396134No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATAGA586670.12953772869424857No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATGAC578340.12769845059919838No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATACT564060.12454540243625521No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATGAA563400.12439967331948053No Hit
TGTTGACTCTGAATAAAGCAGTTTACTGTCAAACTGTAGGCACCATCAAT543300.11996155930861514No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCCG538140.11882222257746762No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATCGA514530.1136090946273914No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATAGC510400.11269718363908922No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTAACTGTAGGCACCATCAATTAG472210.10426476701844499No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)