FastQCFastQC Report
Thu 14 Sept 2023
SRR14340944_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340944_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14409140
Total Bases414.9 Mbp
Sequences flagged as poor quality0
Sequence length16-42
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTTAGGATACTC2818261.9558835572421396No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT2007981.3935460409156966No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT1960791.3607959947644344No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT1662431.153732977818246No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT1641211.139006214111321No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT1480611.0275491805895425No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC804000.5579791715536111No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGG661430.45903502915510574No Hit
ACATACGACCATACCTGGTAGAGAACACGGGAT570040.3956100086472892No Hit
TCATAGTCAAAATCTGAGTTTGATCCTGGCTC543190.37697600273159954No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA497590.3453294228524395No Hit
TTCCGGTGATGATTTCGAAGAGGCC464320.3222399116116576No Hit
GCGGCTGTAGCTCAGTTGGATAGAGTAC463240.3214903873513617No Hit
GGTGGCTGTAGCTCAGTTGGTAGAGTC434030.30121853212613664No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC412120.286012905697356No Hit
TTCCGGTGATGATTTCGAAGAGGC400790.2781498410036963No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATAC395560.27452020037281893No Hit
GCGGCTGTAGCTCAGTTGGATAGAGT388510.26962747256255404No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC384850.2670874181248846No Hit
GCCCGTCTAGCTCAGTCGGTAGAGC362530.25159725007876943No Hit
CGGAGTGTGGCTCAGTCTGGTAGAGC352620.2447196709866099No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC328040.2276610540254311No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCC324090.2249197384437933No Hit
GGCCCTGCCGACTTGGATACGTGAACCCGCC317580.22040177276367637No Hit
GCCCAGGTGGCGGAATTGGTAGACGC306140.21246236763609763No Hit
AGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT294430.20433558144344494No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC286000.19848512818946862No Hit
GCCGGCTTAGCTCAGGGGTAGAGCAACTGATT284940.1977494840080671No Hit
GCCGGCTTAGCTCAGGGGTAGAGCAACTGAT274960.19082332463977725No Hit
AACTTTTAGCGACGGATCTCTTGGCTCATGC269640.18713122365387524No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG242750.1684694575803969No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC237010.16448587493771313No Hit
TCCATTGTCGTCTAGTCCGGTTAGGAT232660.161466957778188No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC228620.15866318184152559No Hit
CGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA221440.1536802335184473No Hit
GGGTGTTTGGTCTAGTGGTATGATTCT218580.15169538223655263No Hit
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTT210780.14628215146774895No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTT208380.14461654200042473No Hit
TTCCGGTGATGATTTCGAAGAGGCT200700.13928659170498725No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT200520.13916167099493792No Hit
GCCCAGATGGCGGAATTGGTAGACGC188670.13093772425002465No Hit
TTGTCGTCCAGCGGTTAGGATATCTGG187050.1298134378595808No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAC186060.12912637395430956No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT185220.12854341064074606No Hit
CGGAGTGTAGCTTAGCCTGGTAAAGCGCT183760.1275301648814572No Hit
AGTGATGATGAAATGCTCCGTGACC177380.12310241971415367No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT172460.11968792030613903No Hit
GTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA168330.11682168401445193No Hit
TTCCGGTGATGATTTCGAAGAGGCCAC160370.11129741261449329No Hit
CGGAGTGTAGCTTAGCCTGGTAAAGC160210.11118637198333835No Hit
AGCACATGACGAAGTGAGCGGGCTCT156030.10828543549441536No Hit
CCGTGTGAAAGTAGGACATCGTCAGGCT155780.10811193450823574No Hit
GCTGCTGTAGCTCAGCTGGTAGAGCACTTC149120.10348986823641106No Hit
AAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA147020.10203245995250237No Hit
GGGGTTGTAGCTCAGCTGGGAGAGCGCATC146570.10172015817737907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)