FastQCFastQC Report
Thu 14 Sept 2023
SRR14340946_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340946_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18577987
Total Bases493.8 Mbp
Sequences flagged as poor quality0
Sequence length20-147
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAATG1705380.9179573653485709No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAT1453780.7825282685363059No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT1104410.5944723720605467No Hit
CCAGTAAAACGCGGCGTGTTCGAAT932830.5021157566748217No Hit
TTGACTACTGAACCATGCCTGGATCGT912870.4913718585334353No Hit
AAGCGATCTCGTACTAAACGA785280.4226938042318579No Hit
TGGACGTCATAATTTGTGGTAGAGGG716390.38561228404347575No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT434700.23398659930163584No Hit
TGGACGTCATAATTTGTGGTAGAGG429220.2310368717558043No Hit
TTTGACTACTGAACCATGCCTGGATCGT374240.20144270743649462No Hit
CGCGTCGAGAGAACCATGTCGAAGGAACT361190.1944182650143958No Hit
AGCACATGACGAAGTGAGCGGGCTCT350430.1886264642127266No Hit
ATGTCGACTCATCACATCCTGGGGT339280.1826247375455694No Hit
GGGAGAATCTTAGCGACAAAGGGCC333400.17945970141975018No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC330930.1781301709383261No Hit
TGACCCGAAACCGATCGATCTAGCCATGAGC310420.16709022349945665No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC301850.1624772371732201No Hit
TCATGCATTGGATGGATGCCCGGGCATTGAGA295930.1592906701894021No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT272210.14652287139613135No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG262260.14116707046893726No Hit
GGGAGAATCTTAGCGACAAAGGA251950.1356174918197542No Hit
CTCACTCTAACGGCGTACCTTT243640.13114445607050967No Hit
GGGAGAATCTTAGCGACAAAGGGCTA242910.13075151791203213No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC234820.12639690188178085No Hit
TCATGCATTGGATGGATGCCCGGGC214560.11549152230540372No Hit
TCCCAGTAAAACGCGGCGTGTTCGAA197010.10604485835844324No Hit
GGGAGAATCTTAGCGACAAAGGGCA193600.10420935271404808No Hit
CCCAGTAAAACGCGGCGTGTTCGAATG192610.10367646397857852No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATA188270.10134036588571194No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAC187450.10089898329673716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)