FastQCFastQC Report
Thu 7 Sept 2023
SRR14340947_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340947_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13468204
Total Bases356 Mbp
Sequences flagged as poor quality0
Sequence length20-147
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAATG1086460.8066851378253551No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAT1026300.762016969745929No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT782790.5812133525747012No Hit
TTGACTACTGAACCATGCCTGGATCGT725880.5389582753572786No Hit
AAGCGATCTCGTACTAAACGA683490.5074841456217919No Hit
CCAGTAAAACGCGGCGTGTTCGAAT683470.507469295831872No Hit
TGGACGTCATAATTTGTGGTAGAGGG492940.36600277215878224No Hit
TGGACGTCATAATTTGTGGTAGAGG306610.2276547043688973No Hit
GGGAGAATCTTAGCGACAAAGGGCC287800.2136884769491166No Hit
TTTGACTACTGAACCATGCCTGGATCGT283210.21028045016247154No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT282580.20981268177999085No Hit
AGCACATGACGAAGTGAGCGGGCTCT275060.2042291607700626No Hit
ATGTCGACTCATCACATCCTGGGGT258880.19221568072476478No Hit
CGCGTCGAGAGAACCATGTCGAAGGAACT250650.18610499217267573No Hit
GGGAGAATCTTAGCGACAAAGGA229530.17042361401713252No Hit
GGGAGAATCTTAGCGACAAAGGGCTA219430.1629244701075214No Hit
CTCACTCTAACGGCGTACCTTT216400.16067472693463808No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT207420.1540071712605482No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC197510.14664910035517728No Hit
TGACCCGAAACCGATCGATCTAGCCATGAGC192480.14291437819029174No Hit
GGGAGAATCTTAGCGACAAAGGGCA188430.1399072957314873No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC186300.13832579310500495No Hit
TCATGCATTGGATGGATGCCCGGGCATTGAGA165390.12280033774362195No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATA159790.11864239656601577No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG159070.11810780412889497No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAC156100.1159026103257717No Hit
TCATGCATTGGATGGATGCCCGGGC148120.10997754414768293No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC142020.10544835822207624No Hit
TGTCGACTCATCACATCCTGGGGT139150.10331741336855307No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT138630.1029313188306325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)