FastQCFastQC Report
Thu 14 Sept 2023
SRR14340948_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340948_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11794587
Total Bases317 Mbp
Sequences flagged as poor quality0
Sequence length16-147
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAAT4166363.5324339885745895No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATG3970563.366425632368476No Hit
TGGACGTCATAATTTGTGGTAGAGGG2965522.5143059269476753No Hit
TGGACGTCATAATTTGTGGTAGAGG2389482.0259123952368996No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT2085531.7682094337003917No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT1527261.2948821353388635No Hit
TTTGACTACTGAACCATGCCTGGATCGT1215551.0305998845063418No Hit
AGCACATGACGAAGTGAGCGGGCTCT996010.8444636509951556No Hit
TCCCAGTAAAACGCGGCGTGTTCGAA651530.5523974684319171No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAACT641020.5434866010993009No Hit
TGGACGTCATAATTTGTGGTAGAG527170.4469592703839482No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAAC457550.3879321929627549No Hit
GGACGTCATAATTTGTGGTAGAGGG456210.38679607857401027No Hit
CCCAGTAAAACGCGGCGTGTTCGAATG413600.3506693367050495No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAC383120.32482697359390367No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGCT327950.27805127894685927No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTC324890.2754568684770395No Hit
GGACGTCATAATTTGTGGTAGAGG309340.2622728544882496No Hit
AGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT302190.2562107515930825No Hit
TGGACGTCATAATTTGTGGTAGAGGA273250.2316740721824342No Hit
TTGACTACTGAACCATGCCTGGATCGT271060.22981728821873967No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATA269580.22856247531176802No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC254130.21546324597885455No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT234150.1985232717347373No Hit
TAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT227890.19321575227687074No Hit
TGGACGTCATAATTTGTGGTAGAGA217750.18461858817099744No Hit
TCCCAGTAAAACGCGGCGTGTTCGA196980.16700881514545612No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC196900.16694098742075497No Hit
TGGACGTCATAATTTGTGGTAGA196620.16670359038430085No Hit
AAGCGATCTCGTACTAAACGA187700.1591407990801204No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG181790.15413002591782146No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC167960.14240430801010667No Hit
CCCAGTAAAACGCGGCGTGTTCGAA167220.14177690155662084No Hit
TGACCCGAAACCGATCGATCTAGCCATGAGC163380.13852117077096468No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAA161810.1371900516737042No Hit
TTTGACTACTGAACCATGCCTGGATCGC157870.13384953623217158No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGA153770.1303733653412366No Hit
CCCAGTAAAACGCGGCGTGTTCGAAC138150.11713000209333316No Hit
AGCACATGACGAAGTGAGCGGGCTCC130670.11078810983377375No Hit
TTTGACTACTGAACCATGCCTGGATCG129960.11018613877705086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)