FastQCFastQC Report
Thu 14 Sept 2023
SRR14340949_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340949_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13940847
Total Bases373.9 Mbp
Sequences flagged as poor quality0
Sequence length16-147
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAAT4624313.3170940044030326No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATG4304683.0878181218113934No Hit
TGGACGTCATAATTTGTGGTAGAGGG3352752.404982997087623No Hit
TGGACGTCATAATTTGTGGTAGAGG2799312.007991336537873No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT2460411.7648927644066388No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT1724011.2366608714664182No Hit
TTTGACTACTGAACCATGCCTGGATCGT1702981.2215757048334295No Hit
AGCACATGACGAAGTGAGCGGGCTCT1200580.8611958799920837No Hit
TCCCAGTAAAACGCGGCGTGTTCGAA739840.5306994618045804No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAACT716710.5141079304578839No Hit
TGGACGTCATAATTTGTGGTAGAG620600.44516663872718776No Hit
GGACGTCATAATTTGTGGTAGAGGG518140.37167038702885125No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAC481260.34521575339002003No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAAC414000.29696904355954845No Hit
TTGACTACTGAACCATGCCTGGATCGT384120.27553562563307665No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATA382950.2746963652925823No Hit
CCCAGTAAAACGCGGCGTGTTCGAATG382250.2741942437213464No Hit
GGACGTCATAATTTGTGGTAGAGG367080.26331255195613296No Hit
TGGACGTCATAATTTGTGGTAGAGGA363220.2605437101490318No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGCT358370.25706472497689703No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTC356050.255400550626515No Hit
AGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT344340.2470007740562679No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC330790.23728113507020054No Hit
TGGACGTCATAATTTGTGGTAGAGA307340.22046006243379618No Hit
AAGCGATCTCGTACTAAACGA263330.18889096193366156No Hit
TAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT252580.18117980923253804No Hit
TGGACGTCATAATTTGTGGTAGA244320.17525477469195377No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT242370.1738560074577965No Hit
TTTGACTACTGAACCATGCCTGGATCGC229340.16450937306750443No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC224690.16117385120143704No Hit
TCCCAGTAAAACGCGGCGTGTTCGA220270.1580033121373472No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG217850.15626740613393147No Hit
TGACCCGAAACCGATCGATCTAGCCATGAGC198900.14267425788404392No Hit
CCCAGTAAAACGCGGCGTGTTCGAA191770.1375597910227406No Hit
CCCAGTAAAACGCGGCGTGTTCGAAC180000.12911697546067324No Hit
AGCACATGACGAAGTGAGCGGGCTCC168530.120889354857707No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGA152790.10959879267020146No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC142940.10253322484638128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)