FastQCFastQC Report
Thu 14 Sept 2023
SRR14340951_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340951_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13062696
Total Bases347.6 Mbp
Sequences flagged as poor quality0
Sequence length20-147
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCTGACCGGTACTAATTGCTCGTG6454754.9413612626367485No Hit
GGATGGACGAACCTCTGGTGCTCCGGT4030273.085327867999071No Hit
AAGCTGACCGGTACTAATTGCTCGT2676272.0487883971272085No Hit
GCGTGAGAGAACCCTGGTTAAGGAA1480141.1331045291109891No Hit
GCGTGAGAGAACCCTGGTTAAGGAAC1232270.9433504385312189No Hit
GGATGGACGAACCTCTGGTGCTCCGG1087310.8323779409702254No Hit
GGCGCGTGAGAGAACCCTGGTTAAGGAAC900630.6894671666553367No Hit
AGTGGACGAATCTCTGGTGTACCGGT888960.6805333294137749No Hit
ATCATGCATTGGATGGATGCCCGGGC675990.5174965412959163No Hit
CGCGTCGAGAGAACCATGTCGAAGGAACT561450.4298117325856775No Hit
AGGCGCGTGAGAGAACCCTGGTTAAGGAAC550030.4210692800322383No Hit
TCATGCATTGGATGGATGCCCGGGC535240.4097469618829069No Hit
AAGCTGACCGGTACTAATTGCTCGTA530660.40624079439650135No Hit
AGTCGCATCGCCGGGTAGCTAAATTCGGA488130.3736824312530889No Hit
GCCTGGTGCCCATAGCGCTGTGGAACCACC457780.3504483301150084No Hit
GGCGCGTGAGAGAACCCTGGTTAAGGAA446550.34185132992454237No Hit
TGATTCACCGAAGCGACGAGACCT431520.3303452824746132No Hit
GGATGGACGAACCTCTGGTGCTCCGGC419510.32115116205720473No Hit
CGTGACTCACCCTGCGCAAGCAGGACTGA386590.29594962632522415No Hit
GAGCTAACCGATACTAATGAACCGTG372780.2853775361533331No Hit
AGGCGCTTGAGAGAACTCAGGAGAAGGAAC342240.2619979826522794No Hit
GAGTGGACGAATCTCTGGTGTACCGGT341790.2616534902136588No Hit
AGTCGCATCGCCGGGTAGCTAAATTCGG331180.25353112404973677No Hit
GGCGCTTGAGAGAACTCAGGAGAAGGAA315610.2416116856734628No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT308870.23645195448167822No Hit
AAGCTGACCGGTACTAATTGCTCGC308790.236390711381479No Hit
AGGTTCAGCCGTGGCTCTGAGCGATTCGT308140.2358931111923603No Hit
AGGCGCTTGAGAGAACTCAGGAGAAGGAA291780.22336889720161904No Hit
GCGTGAGAGAACCCTGGTTAAGGA284770.21800247054666205No Hit
TGGATGGACGAACCTCTGGTGCTCCGGT283020.21666277772980402No Hit
GCGTGAGAGAACCCTGGTTAAGG246170.18845267470053653No Hit
GGTGCTCGAGTGATTCATGGCTAAGGAAC245900.18824597923736416No Hit
GGATGGACGAACCTCTGGTGCTCC243530.18643165239396217No Hit
AGGCGCTTGAGAGAACTCTGGAGAAGGAAC236760.18124895503960284No Hit
CGCGTGAGAGAACCCTGGTTAAGGAAC232030.17762795674032375No Hit
CCGTGTGAAAGTAGGTCATCGTCAGGCT231100.17691600570050775No Hit
GCGTGACTCACCCTGCGCAAGCAGGACTGA223590.17116680966930564No Hit
CAGTCGCATCGCCGGGTAGCTAAATTCGGA220780.1690156457748079No Hit
CAGTCGCATCGCCGGGTAGCTAAATTCGG202600.1550981512545343No Hit
ATCATGCATTGGATGGATGCCCGGGCA201490.15424840323927005No Hit
TGGACGAATCTCTGGTGTACCGGT198740.15214317166992172No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC195520.14967813688690296No Hit
CCCGTGTGAAAGTAGGTCATCGTCAGGCT187740.14372224539252848No Hit
CGCGTCGAGAGAACCATGTCGAAGGAA187480.14352320531688098No Hit
GGCGCTTGAGAGAACTCAGGAGAAGGAAC185460.14197681703685058No Hit
TAGCTAAGGTGTACTAATTGCTCGTG182750.1399022070176019No Hit
AGGCGCGTGAGAGAACCCTGGTTAAGGAA179130.137130956733587No Hit
GGCGCGTGAGAGAACCCTGGTTAAGG175360.13424487563669857No Hit
CGCGTCGAGAGAACCATGTCGAAGGAAC170230.13031766183642335No Hit
AAGCGATCTCGTACTAAACGA160760.12306800985034023No Hit
GTGCGTGAAAGTAGGTCATCGTCAGACT160120.12257806504874645No Hit
GGCGCTTGAGAGAACTCTGGAGAAGGAAC157030.12021255030355144No Hit
AGGCGCTTGAGAGAACTATGCTGAAGGAAC148680.11382030172025744No Hit
GGCGCGTGAGAGAACCCTGGTTAAGGA145110.11108732837386709No Hit
CGCGTGAGAGAACCCTGGTTAAGGAA141370.10822421343955338No Hit
GGGAGAATCTTAGCGACAAAGGGCC141080.10800220720133119No Hit
TGAGCATATGTGATTGACTGTCAGT139980.10716011457359186No Hit
GCGCGTGAGAGAACCCTGGTTAAGGAAC137000.10487880909117075No Hit
GGCGCTTGAGAGAACTCTGGAGAAGGAA132760.1016329247806119No Hit
GGTGCTCGAGTGATTCATGGCTAAGGAA132670.10156402629288779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)