FastQCFastQC Report
Thu 14 Sept 2023
SRR14340952_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340952_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11564007
Total Bases307 Mbp
Sequences flagged as poor quality0
Sequence length16-146
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCTGACCGGTACTAATTGCTCGTG5825925.037976888114994No Hit
GGATGGACGAACCTCTGGTGCTCCGGT2637902.2811297156772734No Hit
AAGCTGACCGGTACTAATTGCTCGT2484382.148372964492325No Hit
GCGTGAGAGAACCCTGGTTAAGGAA1101600.9526109764547877No Hit
AGTGGACGAATCTCTGGTGTACCGGT1054820.9121578705374356No Hit
GCGTGAGAGAACCCTGGTTAAGGAAC1047920.9061910806522342No Hit
GGCGCGTGAGAGAACCCTGGTTAAGGAAC996740.8619330652428696No Hit
AGGCGCGTGAGAGAACCCTGGTTAAGGAAC647040.5595292358435964No Hit
ATCATGCATTGGATGGATGCCCGGGC594120.5137665516805723No Hit
GCCTGGTGCCCATAGCGCTGTGGAACCACC563200.4870284149776112No Hit
GGATGGACGAACCTCTGGTGCTCCGG536940.46432002332755423No Hit
AGTCGCATCGCCGGGTAGCTAAATTCGGA529950.4582754057481978No Hit
CGCGTCGAGAGAACCATGTCGAAGGAACT457920.39598730785963726No Hit
CGTGACTCACCCTGCGCAAGCAGGACTGA451160.39014158327645426No Hit
GAGCTAACCGATACTAATGAACCGTG432400.3739188328059642No Hit
AGTCGCATCGCCGGGTAGCTAAATTCGG422070.3649859430213074No Hit
TCATGCATTGGATGGATGCCCGGGC420860.363939592911004No Hit
GAGTGGACGAATCTCTGGTGTACCGGT413820.3578517377237838No Hit
GGCGCGTGAGAGAACCCTGGTTAAGGAA381150.32960028474559033No Hit
AAGCTGACCGGTACTAATTGCTCGTA354780.3067967703582331No Hit
TGATTCACCGAAGCGACGAGACCT334260.28905205609093804No Hit
GGTGCTCGAGTGATTCATGGCTAAGGAAC330050.2854114495088078No Hit
GCGTGACTCACCCTGCGCAAGCAGGACTGA288010.24905726881694207No Hit
AGGTTCAGCCGTGGCTCTGAGCGATTCGT287140.2483049344401123No Hit
CCGTGTGAAAGTAGGTCATCGTCAGGCT265530.22961764032138685No Hit
AGGCGCTTGAGAGAACTCAGGAGAAGGAAC251430.21742463490380107No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT250920.21698361130359053No Hit
CAGTCGCATCGCCGGGTAGCTAAATTCGG250900.21696631626044505No Hit
AAGCTGACCGGTACTAATTGCTCGC242110.2093651447979926No Hit
GGCGCTTGAGAGAACTCAGGAGAAGGAA241620.20894141624092757No Hit
GCGTGAGAGAACCCTGGTTAAGGA237790.20562941547856206No Hit
GGATGGACGAACCTCTGGTGCTCCGGC231790.2004409025349085No Hit
CAGTCGCATCGCCGGGTAGCTAAATTCGGA224090.1937823109238865No Hit
AGGCGCTTGAGAGAACTCAGGAGAAGGAA223530.19329804971581216No Hit
GCGTGAGAGAACCCTGGTT222280.1922171095192177No Hit
TGGACGAATCTCTGGTGTACCGGT217780.18832572481147755No Hit
AAGCGATCTCGTACTAAACGA203570.17603759665659144No Hit
CGCGTGAGAGAACCCTGGTTAAGGAAC194480.16817699954695634No Hit
GCGTGAGAGAACCCTGGTTAAGG191080.16523684221221935No Hit
AGGCGCTTGAGAGAACTCTGGAGAAGGAAC190230.16450180287853508No Hit
CCCGTGTGAAAGTAGGTCATCGTCAGGCT189510.1638791813252967No Hit
GTGCGTGAAAGTAGGTCATCGTCAGACT183440.15863013573063386No Hit
TAGCTAAGGTGTACTAATTGCTCGTG182940.15819775965199606No Hit
TGGATGGACGAACCTCTGGTGCTCCGGT180590.1561655920823984No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT174420.15083007127200804No Hit
GGTGCTCGAGTGATTCATGGCTAAGGAA173030.149628065773395No Hit
GGCGCGTGAGAGAACCCTGGTTAAGG160400.13870624602700432No Hit
AGGCGCGTGAGAGAACCCTGGTTAAGGAA159740.13813550960320242No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG158630.1371756347086265No Hit
GGATGGACGAACCTCTGGTGCTCC149850.12958311076774687No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC146610.12678131377817395No Hit
ATCATGCATTGGATGGATGCCCGGGCA145480.12580414384045252No Hit
GGAGTGGACGAATCTCTGGTGTACCGGT144540.12499127681261349No Hit
GGCGCGTGAGAGAACCCTGGTTAAGGA143960.12448972056139365No Hit
GGTGCTCGAGTGAATCATGGCTAAGGAAC143050.12370279609827287No Hit
GCGCGTGAGAGAACCCTGGTTAAGGAAC139860.12094423671656374No Hit
GGCGCTTGAGAGAACTCAGGAGAAGGAAC138350.11963846095907758No Hit
CCCGTGTGAAAGTAGGACATCGTCAGGCT136090.11768412108363475No Hit
TGATCGTACTGCAAACCGACTCAGGTGGACG131810.11398298185049524No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC129950.11237454283796265No Hit
GTGATCGTACTGCAAACCGACTCAGGTGGACG128660.11125901255507716No Hit
TGAGCATATGTGATTGACTGTCAGT127260.11004835953489131No Hit
GGCGCTTGAGAGAACTCTGGAGAAGGAAC127220.1100137694486003No Hit
CGCGTCGAGAGAACCATGTCGAAGGAA121710.10524898506201182No Hit
AGTGGCATCGCCGGGTAGCTAAGTTCGGA121440.1050155019795474No Hit
ATCTCTGGTGGACCTGTTGTCCTG121360.10494632180696535No Hit
CGCGTCGAGAGAACCATGTCGAAGGAAC117740.10181591899762771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)