FastQCFastQC Report
Thu 14 Sept 2023
SRR14340954_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340954_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11673597
Total Bases318.5 Mbp
Sequences flagged as poor quality0
Sequence length15-147
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAATG4298653.6823697100388166No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAT3919073.357208579326492No Hit
TGGACGTCATAATTTGTGGTAGAGGG2194001.8794549786154173No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT1558831.3353467658683096No Hit
TGGACGTCATAATTTGTGGTAGAGG1238841.0612324547438121No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAACT727290.6230213360971772No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT723620.6198774893462572No Hit
AGCACATGACGAAGTGAGCGGGCTCT524070.44893617622743015No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAAC463470.397024156307606No Hit
TTTGACTACTGAACCATGCCTGGATCGT445590.3817075405292816No Hit
TCCCAGTAAAACGCGGCGTGTTCGAA409720.3509800792335045No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGCT401180.34366442494117283No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAC344340.2949733488315555No Hit
TGGACGTCATAATTTGTGGTAGAG331880.2842996892902847No Hit
CCCAGTAAAACGCGGCGTGTTCGAATG329810.28252645692668676No Hit
GGACGTCATAATTTGTGGTAGAGGG318100.2724952728794732No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC297250.2546344541446822No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATA291760.2499315335281833No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTC280900.24062848837423462No Hit
TTTGACTACTGAACCATGCCTGGATCG273030.23388677885659406No Hit
GAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCT213020.1824801729920949No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAACT208790.1788566112056121No Hit
AAGCGATCTCGTACTAAACGA197180.1689110905576062No Hit
TGGACGTCATAATTTGTGGTAGAGGA193070.16539032485017258No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC187520.16063600619414906No Hit
AGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT181750.15569322805986877No Hit
TCCCAGTAAAACGCGGCGTGTTCGA181130.15516211498478147No Hit
TGACCCGAAACCGATCGATCTAGCCATGAGC179420.153697270858331No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAA171660.14704979107981886No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG171210.1466643057833845No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC166140.14232117144355763No Hit
TAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT164990.1413360423526699No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGA161690.13850915017881807No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT139620.11960323797369397No Hit
AGTAAAACGCGGCGTGTTCGAATG134920.11557705821093534No Hit
GGACGTCATAATTTGTGGTAGAGG134120.11489175101727428No Hit
GGGCGCGTCGAGAGAACCATGTCGAAGGAACT133450.11431780624258316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)