FastQCFastQC Report
Thu 7 Sept 2023
SRR14340955_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340955_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14207960
Total Bases396.6 Mbp
Sequences flagged as poor quality0
Sequence length16-147
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTAGTCTAGCTGGTTAGGATACTCGG2627511.849322492461972No Hit
TTGTCGTCCAGCGGTTAGGATATCTGG1395110.9819214018057484No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGG1252740.8817170093384272No Hit
GCCCCTATCGTCTAGTGGTTCAGGACA1216400.8561397976908719No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC1104800.777592279257543No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTG1068960.7523669830151549No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTGG1037030.7298936652411747No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATG873210.6145921018921787No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG828870.5833842437619475No Hit
TTGACTACTGAACCATGCCTGGATCGT794430.5591443106540277No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT786200.5533517830849749No Hit
GCGGGTATAGTTTAGTGGTAAAACC779080.5483405077153933No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGT638370.4493044743932275No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT480300.33804993820365487No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC470810.3313705838135806No Hit
TTGTCGTCTAGTCCGGTTAGGATACCTGG469350.3303429908304922No Hit
TTTGACTACTGAACCATGCCTGGATCGT439770.309523675460798No Hit
CTGCGGCAAAATAGCTCGATGCCAGAA426710.3003316450778296No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG426510.3001908789157627No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC424330.2986565277492335No Hit
GCTCTTAGTTCAGTTCGGTAGAACGCGGG396270.27890703521124777No Hit
AGGGATATAACTCAGCGGTAGAGT380780.26800469595916654No Hit
TGGACGTCATAATTTGTGGTAGAGGG370850.2610156560125451No Hit
TTGTAGTCTAGCTGGTTAGGATACTCGA363500.2558424995565866No Hit
GGCGGATGTAGCCAAGTGGATCAAGGCA318070.22386746584309078No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG305820.2152455384164933No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCA299390.2107199063060425No Hit
CCTGCGGCAAAATAGCTCGATGCCAGAA284020.19990202675120144No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT268780.18917564520170382No Hit
TTGTAGTCTAGCTGGTTAGGATACTCG239130.16830706167528625No Hit
AGGGCTATAGCTCAGTTCGGTAGAGC224560.15805224676871274No Hit
TCCTGCGGCAAAATAGCTCGATGCCAGAA224250.15783405921750907No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA219290.15434305839825No Hit
TCATGCATTGGATGGATGCCCGGGCATTGAGA213820.15049310386572035No Hit
GCGGGTATAGTTTAGTGGTAAAACT212520.1495781238122855No Hit
CGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA211030.1485294159048871No Hit
AGGGATATAACTCAGCGGTAGAGTG210460.14812823234299646No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAT194780.1370921652369517No Hit
TTGTCGTCCAGCGGTTAGGATATCTGA187720.1321231197159902No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA187170.13173601277030622No Hit
GCCCGTCTAGCTCAGTCGGTAGAGC178660.12574641257435973No Hit
CCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA178050.1253170757800557No Hit
TGGACGTCATAATTTGTGGTAGAGG172540.12143896801511266No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCG170960.12032691533478417No Hit
CCCAGTAAAACGCGGCGTGTTCGAATG167000.11753974532585959No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC162760.11455550269004136No Hit
GCCCCTATCGTCTAGTGGTTCAGGACATCTCT161820.11389390172832693No Hit
GCCTTGATGGTGAAATGGTAGACACG161720.1138235186472935No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATA161510.11367571417712326No Hit
GCCCCTATCGTCTAGTAGTTCAGGACA161270.11350679478264297No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGC161100.1133871435448861No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTGA156670.11026917305510434No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT149900.10550423846913982No Hit
GGAGAGATGGCTGAGTGGACTAAAGCG149040.10489894397225218No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC148160.10427957285915782No Hit
AGCACATGACGAAGTGAGCGGGCTCTT147950.10413176838898759No Hit
GTCAGGATAGCTCAGTTGGTAGAGC147850.10406138530795414No Hit
TTGTCGTCTAGTCCGGTTAGGATATCTGG146710.10325901818417282No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTA145760.10259037891435505No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGA144960.10202731426608745No Hit
GCGCTGCAGCGCTGAAGTATGAGCCCCGTG142570.10034515862938802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)