FastQCFastQC Report
Thu 14 Sept 2023
SRR14340956_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340956_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11820833
Total Bases327 Mbp
Sequences flagged as poor quality0
Sequence length16-147
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTAGTCTAGCTGGTTAGGATACTCGG1873891.5852436118503663No Hit
GCCCCTATCGTCTAGTGGTTCAGGACA1148640.9717081698049537No Hit
TTGTCGTCCAGCGGTTAGGATATCTGG953680.8067790146430458No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGG937470.7930659370621342No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTG896980.7588128518523186No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATG875080.7402862387109267No Hit
GCGGGTATAGTTTAGTGGTAAAACC845550.715304919712511No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTGG834720.7061431288302609No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC758010.6412492249911661No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT571210.48322313664358507No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGT537080.4543503829214066No Hit
AGGGATATAACTCAGCGGTAGAGT531290.44945225095388797No Hit
TTGACTACTGAACCATGCCTGGATCGT513800.43465633936288584No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG492410.41656116789738934No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGC466260.3944392074568688No Hit
TCCGTTGTCGTCCAGCGGTTAGGATATCTGG421560.35662461351073993No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT356430.3015269736066824No Hit
TGGACGTCATAATTTGTGGTAGAGGG318800.2696933456381627No Hit
GCCCGTCTAGCTCAGTCGGTAGAGC298830.2527994431526103No Hit
TTGTAGTCTAGCTGGTTAGGATACTCGA284560.24072753586824208No Hit
CTGCGGCAAAATAGCTCGATGCCAGAA277480.23473811024992908No Hit
TTGTCGTCTAGTCCGGTTAGGATACCTGG264650.2238843912269127No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGG252080.21325062286219593No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT249040.210678892088231No Hit
GCTCTTAGTTCAGTTCGGTAGAACGCGGG248770.21045048178922754No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCA247270.20918153568365278No Hit
TTTGACTACTGAACCATGCCTGGATCGT244720.2070243273041756No Hit
GCGGGTATAGTTTAGTGGTAAAACT242820.20541699557044754No Hit
CCTGCGGCAAAATAGCTCGATGCCAGAA234210.1981332449244482No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC229410.1940726173866089No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAT222850.18852309308489512No Hit
GGCGGATGTAGCCAAGTGGATCAAGGCA221710.18755869404465828No Hit
AGGGCTATAGCTCAGTTCGGTAGAGC218900.1851815350068815No Hit
GTCAGGATAGCTCAGTTGGTAGAGC218570.18490236686365505No Hit
CGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA204300.17283045957928683No Hit
AGGGATATAACTCAGCGGTAGAGTG197620.1671794195891271No Hit
GGAGAGATGGCTGAGTGGACTAAAGCG177280.1499725103975329No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC172760.14614875279940084No Hit
GTCAGGATAGCTCAGTTGGTAGAGCAGAGGA162800.13772295065838425No Hit
TCATGCATTGGATGGATGCCCGGGCATTGAGA157840.13352696886928359No Hit
GGGGATATGGCGAAATCGGTAGACGCT157520.13325626036676097No Hit
GGGGATATGGCGAAATCGGTAGACGCTA155920.13190271785414784No Hit
TGGACGTCATAATTTGTGGTAGAGG154350.13057455426364623No Hit
TTGTAGTCTAGCTGGTTAGGATACTCG149190.12620937966046894No Hit
TCCTGCGGCAAAATAGCTCGATGCCAGAA146840.12422136409506843No Hit
AGCACATGACGAAGTGAGCGGGCTCTT146100.12359535068298486No Hit
GCCTTGATGGTGAAATGGTAGACACG142510.12055833967030918No Hit
GCCCCTATCGTCTAGTAGTTCAGGACA139690.11817272099182857No Hit
AGTGAAATAGAACGTGAAACCGTGT139620.11811350350690177No Hit
TTGTCGTCCAGCGGTTAGGATATCTGA138930.11752978829833735No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCA135470.11460275261481148No Hit
GCGGGTATAGTTTAGTGGTAAAACCCTAGT133160.11264857561222631No Hit
GCCCCTATCGTCTAGTGTTCAGGACA132960.11247938279814967No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTGA132900.11242862495392668No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTA132210.11184490974536228No Hit
CCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA132060.1117180151348048No Hit
TGACCCGAAACCGATCGATCTAGCCATGAG125970.10656609394617113No Hit
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCG125650.1062953854436485No Hit
AGCACATGACGAAGTGAGCGGGCTCT124650.10544942137326531No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACC124250.10511103574511205No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAAC121470.10275925562944677No Hit
GCCCCTATCGTCTAGTGGTTCAGGACATCTCT121440.10273387670733526No Hit
AGGTGTGAAGCGATCTCGTACTAAACGA120130.10162566377513327No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGA118260.10004371096351669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)