FastQCFastQC Report
Thu 14 Sept 2023
SRR14340958_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340958_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13039663
Total Bases340.1 Mbp
Sequences flagged as poor quality0
Sequence length20-147
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAAT779570.5978452050486275No Hit
AACTCGTGCTCTCGTTCTAGTGGAACCACC731050.560635654464383No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATG712900.546716583089609No Hit
GAGCTGAGTCGTACTAATGAGCC441860.33885845055965025No Hit
CCCAGTAAAACGCGGCGTGTTCGAAT415110.3183441167152863No Hit
AACTCGTGCTCTCGTTCTAGTGGAACCACT276540.21207603294655697No Hit
AGCACATGACGAAGTGAGCGGGCTCT262830.20156195754445494No Hit
GAGCTGAGTCGTACTAATGAGCT248240.1903730180756972No Hit
TCCCAGTAAAACGCGGCGTGTTCGAA169130.1297042722653185No Hit
ACTCGTGCTCTCGTTCTAGTGGAACCACC165980.127288565663085No Hit
TGGACGTCATAATTTGTGGTAGAGGG161710.12401394115783514No Hit
AAGCGATCTCGTACTAAACGA155930.11958131126548285No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT155360.11914418340412633No Hit
TGGACGTCATAATTTGTGGTAGAGG154520.11849999497686405No Hit
CGCGTCGAGAGAACCATGTCGAAGGAACT148290.11372226414133556No Hit
GCGCGTCGAGAGAACCATGTCGAAGGAAC144390.11073138930047502No Hit
TGATTCACCGAAGCGACGAGACCT141270.1083386894277866No Hit
GAGCTAACCGATACTAATGAACCGTG133780.10259467595136469No Hit
GTCGATGGCCCGAGGTAGAGCACTCAATGGGC133320.10224190609834012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)