FastQCFastQC Report
Thu 14 Sept 2023
SRR14340959_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340959_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13752767
Total Bases415 Mbp
Sequences flagged as poor quality0
Sequence length17-42
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT6209584.515149569537534No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT3912592.84494749311175No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT1320850.9604249094018681No Hit
CGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA891500.6482331882740398No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC857230.6233145664432475No Hit
CGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA769600.5595964797484027No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT599620.43599953376655043No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC589020.4282919938947559No Hit
TCCGTTGTAGTCTAGCTGGTTAGGAT565180.41095730044724815No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC543220.39498960463737953No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGG478580.3479881539474929No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTC457580.33271849948450377No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC453550.3297881800804158No Hit
GTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA430760.3132169693560576No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGC424310.3085270040567109No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCG424120.30838885004014105No Hit
GTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA403160.29314828063327186No Hit
TAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT397530.28905455898438476No Hit
AGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT374380.2722215827549467No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC360210.261918201624444No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC333100.242205804839128No Hit
TCATAGTCAAAATCTGAGTTTGATCCTGGCTC327160.23788667400531108No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCG270490.19668042074733033No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTC228730.16631562215807189No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCC213800.1554596249612896No Hit
AACTTTTAGCGACGGATCTCTTGGCTCATGC209430.15228208258018186No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCA203290.14781752646576504No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCC190660.13863391999588157No Hit
AACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA189810.138015862553332No Hit
AGCACATGACGAAGTGAGCGGGCTCT188330.13693971547689276No Hit
CCTCCTAAAATCTTACCATCTCTTGAATATC183620.13351495011876519No Hit
TGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAA180710.1313990122860367No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC173950.1264836378017602No Hit
TGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGA165260.12016490935969468No Hit
GGCCCTGCCGACTTGGATACGTGAACCCGCC163140.11862340138533577No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG160230.11650746355260726No Hit
CGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGG156530.11381709586150918No Hit
TCCGTCCAAGGCTAAATACATACCCGCTGAG153700.11175932814102064No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCG151320.11002876730188188No Hit
GCGGCTGTAGCTCAGTTGGATAGAGTAC149840.10895262022544262No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCCACG146660.10664035826390428No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT145250.105615110035675No Hit
TCCTCCTAAAATCTTACCATCTCTTGAATATC144530.10509157902551537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)