FastQCFastQC Report
Thu 14 Sept 2023
SRR14340960_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14340960_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10459316
Total Bases294.1 Mbp
Sequences flagged as poor quality0
Sequence length16-148
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT1910031.8261519204506298No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT1075681.0284420128429048No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTG933750.8927448028150216No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC705170.674202787256834No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATG692780.6623568883471921No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCC577210.5518620911730748No Hit
AGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT470200.4495513855781774No Hit
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGG442020.42260889717836236No Hit
TCATGCATTGGATGGATGCCCGGGCATTGAGA335450.32071886918800424No Hit
AGCACATGACGAAGTGAGCGGGCTCT313270.299512893577362No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACTC288180.275524709263971No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATACT287810.27517095764197197No Hit
TGGACGTCATAATTTGTGGTAGAGGG274060.26202478250011757No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCC262550.2510202387995544No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC253980.24282658636568585No Hit
TTGACTACTGAACCATGCCTGGATCGT245210.2344417168388449No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAT236020.22565529141676186No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCT224280.21443084805928037No Hit
GGAAGAGCACACGTCTGAACTCCAGTCACACATTGGCATCTCGTATGCCG211450.2021642715450991TruSeq Adapter, Index 5 (97% over 35bp)
TAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCT148780.14224639546218892No Hit
TTTGACTACTGAACCATGCCTGGATCGT142330.13607964421382812No Hit
AGTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCC142120.1358788662662071No Hit
GGGTGTTTGGTCTAGTGGTATGATTCTCGCT135310.12936792425049592No Hit
GGGCCTGTAGCTCAGAGGATTAGAGCACGTGG132860.12702551486158367No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCT122660.11727344311998986No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAAC118320.11312403220248819No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTT116560.11144132178433083No Hit
TGGACGTCATAATTTGTGGTAGAGG114280.10926144692444514No Hit
GGCGCGTCGAGAGAACCATGTCGAAGGAACT114170.10915627752331031No Hit
TGACCCGAAACCGATCGATCTAGCCATGAGC112980.10801853582012438No Hit
GGGAGAGGGATGCAACACGAGGAC112840.10788468385504368No Hit
GTAGTGGGCCGGCGGGGCTTGGGCGAAAGCTCA106980.10228202303095155No Hit
AGGGATGTAGCGCAGCTTGGTAGCGCTTTTGTT106700.10201431910079013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)