FastQCFastQC Report
Thu 14 Sept 2023
SRR14602122.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14602122.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120963907
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA6416400.5304392160547525No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT3917960.32389496149458863No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA3569090.29505412717861373No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT3095530.2559052594093212No Hit
CCCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2906200.24025348321462534No Hit
GCCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2803270.23174433345642514No Hit
CGCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2604850.215341093438723No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2514540.20787523008826098No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2510210.20751727207356158No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG2276920.18823135400214877No Hit
GGCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2271260.18776344583512833No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC2224550.18390196341789788No Hit
CCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGCA2144510.17728511364964425No Hit
CCGCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAG2126500.17579623978249975No Hit
CGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA2120790.17532419815110634No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGGA2118310.17511917831820695No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG2098630.17349224674100516No Hit
CCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1924270.15907802977957716No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATC1906000.15756766189769317No Hit
CGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG1840960.15219085144133115No Hit
CGCCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1807050.14938753590358156No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG1735370.14346180137848888No Hit
CCCCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1722150.14236891339827507No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGATC1691670.13984915351651134No Hit
GGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG1655680.1368738858608461No Hit
CCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAA1646250.13609431448010356No Hit
GGGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1619520.13388456442631272No Hit
GGCCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1556750.12869541325248365No Hit
CGCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA1537650.12711642986200836No Hit
CGGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1509030.12475043485491917No Hit
GCCCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1484010.12268204928268396No Hit
GCGCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAG1423460.11767642392701487No Hit
CCCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATC1415790.11704235049220095No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCAAAAAAAAAAA1410960.11664305783377187No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCAAAAAAAAAAAA1327170.10971619823754535No Hit
GCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAA1313130.1085555214416148No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATC1306940.10804379855224087No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCAAAAAAAAAAA1305770.10794707548591333No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAAAAAAAGATCG1254870.10373920875422782No Hit
GCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1244950.10291912942263018No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATCGG1212560.10024147120181891No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)