FastQCFastQC Report
Thu 14 Sept 2023
SRR14602126.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14602126.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137949003
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA8112030.5880455692746108No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA5041890.36548941205468516No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG4585290.33239022394384393No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGGA4269930.3095296020370658No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG4258460.30869813535368573No Hit
CCCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC3888020.2818447335933265No Hit
GCCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC3814910.2765449490055394No Hit
CGCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC3613930.2619757969544731No Hit
CCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA3419270.24786478522066593No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG3374750.24463750564402412No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGATC3144460.2279436553811121No Hit
GGCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGC3124550.22650036840063278No Hit
CCGCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAG3059530.22178703241515998No Hit
CCCCCGCGAGGGGGGCCCGGGCAAAAAAAAAAAAAAAGATCGGAAGAGCA2869440.20800730252468733No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT2654520.19242763211561592No Hit
GCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2386440.17299436372149785No Hit
CCCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG2338150.1694937947467442No Hit
GCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA2243100.16260356734872525No Hit
GCCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA2176520.15777714609506818No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT2143310.15536973471276194No Hit
CGCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA2122110.15383293491436106No Hit
GCGCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAG2087460.151321137130654No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA2087330.15131171335830532No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTAAAAAAAAAAAAAAAGATCG2042480.14806051189800915No Hit
GCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGGA1993770.14452949688951358No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA1934200.14021123443712022No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGAA1918710.1390883557164962No Hit
CCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAGC1876350.1360176557419556No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1869470.1355189207130406No Hit
CGCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA1853600.1343684955809358No Hit
CGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1847830.13395022506976728No Hit
CCGGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGATC1736400.12587260235581407No Hit
CGCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1731060.1254855027839527No Hit
GCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1691570.12262285070664845No Hit
GCGGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGATC1655760.12002696387736851No Hit
CCCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA1648640.11951083111488671No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAAAGATCGGA1610100.11671704506628437No Hit
CGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG1603390.1162306334319792No Hit
GGCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA1574770.11415595370413804No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAAAAAAA1569160.11374928168201404No Hit
CCGGGGGGGGATGCGTGCATTTATCAGATCAAAAAAAAAAAAAAAGATCG1568010.11366591754200644No Hit
GGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1544590.11196818870811266No Hit
CCGCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA1504920.10909248833063331No Hit
CGCGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGATC1475560.10696416559096118No Hit
GGCCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGATCGGAAGAG1425450.10333166380332592No Hit
GGGCGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGAT1423610.10319828117931377No Hit
CCGCGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGAT1416440.10267852388900556No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAAAAAAA1411750.10233854317888763No Hit
GGCGGGCCGCCGGTGAAATACCACTACTCTGAAAAAAAAAAAAAAAGATC1408410.10209642472008297No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)