FastQCFastQC Report
Thu 14 Sept 2023
SRR14714417_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14714417_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48717180
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length85
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAAAA9855242.02294960422586No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT6561671.3468903577752243No Hit
TACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC4316320.8859954537598441No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3384140.6946502240072188No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAAAAAAA3234330.6638992651052462No Hit
ACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCG2978040.6112915402738829No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2490130.511140012619778No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAA2432720.49935566878050003No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTCAAAAAAAAA2357610.48393810971817336No Hit
GGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCA2135730.4383936016000926No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAAAAAAAAAAA1988370.40814554537023695No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGC1498180.3075260103314683No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC1445300.29667152326961455No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCTAAAAAAAA1440680.2957231925164798No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCAC1440130.2956102959982495No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGAAAAAAAA1415920.2906407965321474No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAAAAAAAAAAAAAGATCT1311230.26915145745299707No Hit
GAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAA1243100.2551666578402116No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA1197200.2457449302278991No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAAA1162060.23853186904496523No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1157430.2375814856278627No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAA1150760.23621235876132404No Hit
AGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCT1006940.20669094557607806No Hit
GAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGAAAAAAAAAAAAA952070.19542797838462736No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAAAAA924700.18980983710469285No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG909600.1867103145132785No Hit
ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGA863550.17725779694144858No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAAAAAAAAAA803990.16503213034908834No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCACAAAAAAAAA803990.16503213034908834No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAAAAAAAA749230.1537917424612837No Hit
GGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA742410.15239182563522766No Hit
CAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGC719400.14766864584526443No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAAAAAAAAAA708350.14540045216081884No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCT684660.14053769122104356No Hit
CCGTTGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCC683160.14022979162586996No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGTAAAAAAA629840.12928498734943197No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG599220.12299973027995463No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAAAAAAAAAAAA598580.12286835978601389No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAAAAAAAAAAAAAGATCTG583360.11974420522698563No Hit
AAAGATTAAGCCATGCATGTCTAAGTACGCACGGAAAAAAAAAAAAAAAG533020.10941109481295921No Hit
GAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTAAAAAAAAAAAAAA532880.10938235751740968No Hit
CCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGG525370.10784080687757377No Hit
AAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAAA520550.10685142284508257No Hit
TGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCGGAA518370.10640394210009692No Hit
TGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCGGAACG500280.10269067298230317No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGAAAAAAA490900.10076527418048417No Hit
AAAGATTAAGCCATGCATGTCTAAGTACGCACGGCAAAAAAAAAAAAAAA490810.10074680020477375No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)