FastQCFastQC Report
Thu 14 Sept 2023
SRR14714418_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR14714418_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39530893
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length85
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAAAA6497691.6436992708462212No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT6152681.5564232257540955No Hit
TACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC3819510.9662088837709788No Hit
ACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCG2530260.6400715511283795No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAAAAAAA2409660.6095637657363319No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAA2327410.5887572537255862No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2259290.5715251613465955No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAAAAAAAAAAA1606750.40645426350474806No Hit
GGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCA1559710.3945547094015812No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1525190.38582229852485245No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC1479750.37432749115988856No Hit
GGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCAC1180780.29869803345955276No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA1166930.29519444450698346No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTCAAAAAAAAA1135100.28714251408385844No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAA1121780.2837729974883188No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAAA1077760.27263740285351No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGC1071420.27103359390338083No Hit
AGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCT907480.22956223124026062No Hit
GAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAA824890.20866971054764688No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG793460.20071896680907259No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAAAAAAAAAAAAAAAGCT790400.19994488867225943No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGAAAAAAAA743150.18799221155970344No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCTAAAAAAAA713880.18058787591770314No Hit
GAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGAAAAAAAAAAAAA709610.179507708060124No Hit
AAAGATTAAGCCATGCATGTCTAAGTACGCACGGAAAAAAAAAAAAAAAA702640.17774453008182742No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA654920.1656729586149243No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCAAAAAAAAAA642430.16251340438982748No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAAAAAA591610.14965763611765615No Hit
CCGTTGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCC585980.14823343353260449No Hit
CAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGC566220.14323481131579802No Hit
CCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGG556980.14089739890267594No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAAAAAAAAAAAA528490.13369037729554958No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAAAAAAAAAAA524400.13265574344601827No Hit
AAAGATTAAGCCATGCATGTCTAAGTACGCACGGCAAAAAAAAAAAAAAA522340.13213463202058198No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG520000.13154268991596016No Hit
ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGA518750.1312264815267391No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCT518050.1310494048287753No Hit
GGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA503970.1274876335325893No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAA468980.11863632830151345No Hit
GAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTAAAAAAAAAAAAAA439010.11105491596154937No Hit
AGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCACAAAAAAAAA435090.11006328645295212No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAAAAAAAA431880.10925126330943245No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAAAAAAAAAAAAA404590.10234780175595831No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)