FastQCFastQC Report
Thu 14 Sept 2023
SRR15175567.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15175567.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42820647
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length5-50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA7503221.7522434913232396No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA7181431.677095163928747No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA6625321.5472255708793938No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA6551521.5299908943458982No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA5243811.2245984980096167No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAA4798411.1205832550825305No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA4772511.1145347710416424No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAA4326971.0104868336062274No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA3328910.7774076837278989No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA3084900.7204234910322583No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA3007670.7023877990446992No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA2241270.5234087191629776No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA2133500.49824095371562227No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAA2030140.4741030652806344No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG1976600.4615997511667677No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1954380.45641066563053095No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA1676090.391420989038302No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1615910.3773670211008255No Hit
CCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1558440.3639459254317199No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAAA1334400.3116253708170267No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA1267210.2959343421410704No Hit
CCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1162410.2714601673346972No Hit
CGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1113240.25997738894510397No Hit
GCGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA1045190.24408552257512597No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1043550.2437025297632705No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1020410.2382985946008709No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG966250.22565049052154676No Hit
CGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA963150.22492654069425902No Hit
GGGCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA917520.21427046630098792No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG906150.21161520516025834No Hit
CCGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA894330.2088548545284708No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA890790.20802815053214868No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG834950.194987712352875No Hit
GGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA788960.1842475663667576No Hit
CGGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAGA786990.18378750792812634No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA735670.17180263530347872No Hit
CGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA735280.17171155774456187No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG730910.1706910220202885No Hit
GCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA723370.1689301892145628No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG714410.16683774068149881No Hit
CGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCAAAAAAAAAAAAA706590.16501151885911486No Hit
CCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGGA704100.16443002367526113No Hit
GGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA703430.16427355709968605No Hit
CCGGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAAA682160.15930632715568263No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG675020.1576389072308973No Hit
CCCCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAGATC647980.15132419647932924No Hit
GCGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAA637250.14881839594810417No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG635860.14849378618683645No Hit
GCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA633450.14793097357917082No Hit
GCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA623710.14565636992827313No Hit
CGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA621680.14518229955750084No Hit
CCGCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAA618700.14448637359449518No Hit
CGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG608310.14205997401206946No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA606230.1415742270311796No Hit
CGCCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAGATC605830.14148081415023925No Hit
GGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG594130.13874848738273385No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA592620.13839585375718402No Hit
CCGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAA576020.13451921919815923No Hit
CGCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAA575450.13438610584281924No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA569160.13291718829003216No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA560270.13084108701113276No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAA558460.13041839372487762No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCAAAAAAAAAAAAAAA556760.13002138898088111No Hit
CCCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG553500.1292600740012172No Hit
CCGCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCAAAAAA550590.12858049529237614No Hit
CCGCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA536280.1252386494767349No Hit
CGCCTCGCTTCTGGCGCCAAGCGCCCGGCCAAAAAAAAAAAAAAAGATCG511290.11940267973998618No Hit
CGCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAA510200.11914812963942371No Hit
GCGGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAAA509150.11890292082695528No Hit
GGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAGC504400.11779364286578856No Hit
GCCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAAA498290.11636676110942461No Hit
CGGGGGGGGATGCGTGCATTTACCAAAAAAAAAAAAAAAGATCGGAAGAG495100.11562179338392528No Hit
CCGGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCAAAAAAA487990.11396137942521047No Hit
CCGCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAGATC474970.11092079015060188No Hit
CCCGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTAAAAAA456710.10665649213567464No Hit
GCCCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAAGATC450990.10532068793822756No Hit
CCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA450290.10515721539658195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)