FastQCFastQC Report
Thu 14 Sept 2023
SRR15283613_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15283613_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43248406
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length84
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAGATCGG12272662.8377138338925136No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAGATCGGA6251461.4454775512420042No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAGATCGG5575261.289124967981479No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAGATCG5534921.2797974565814056No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAGATCGGA5063731.1708477764475296No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAGATCGGA4493511.0390001425717286No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAGATCGGA4230470.9781794038836946No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAGATCGGA3038500.7025692461359154No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAGAT2917940.6746930742372332No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAGATCG2583750.5974208621700416No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAAAAAGATCGG2471150.5713852205327521No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAGATCGG2444230.5651607136688459No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAGATCG2228650.5153137898307744No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAG2192200.5068857335458792No Hit
GCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAGA2104130.4865219772492887No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAGATC2074810.4797425366382289No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAGATC2034200.4703525951916008No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAGATCGG2020890.46727502511884483No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAGATCGGAA1887890.4365224466307498No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAAAAAAAAAAAAAGATCGGAA1835770.4244711354217309No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAGATC1748180.4042183658745712No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAGATCG1664750.38492748148914435No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAGATCGGAA1565560.3619925321640756No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAGATCGGA1287600.29772195534790347No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAGATCGG1251760.2894349447237431No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAGATCGG1165520.2694943254093573No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAGATCG1137670.2630547817184291No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAGAT1097400.2537434558859811No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAGATCGG989710.22884311620641No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAAAAAGATCGGAA977430.2260037052001408No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAGATC952890.22032950763549528No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAAG927040.21435240873386177No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACATGAAAAAAAAAAAAAGAT912440.21097656177201074No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAGATCGG890380.2058757957460906No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAGATCGGA826800.1911746758944133No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAAAAAAGATCG805800.18631900560681935No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAAAAAAAAGATCGGAA803160.1857085784849504No Hit
GTCGCGGCGTGGGAAATGTGGCGTACGAAAAAAAAAAAAAGATCGGAAGA783010.1810494472328067No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAGATCGG780380.18044133233488419No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAGA779340.18020086104445096No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAGA761510.17607816574788906No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAGATCGG756030.1748110670252217No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAAAAAGATCG747840.17291735561306004No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAGATCGGAA730670.16894726709696536No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAGAT698710.16155739936403668No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAGATCGGAA689120.15933997659936877No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAGATCGGAA680790.15741389405195652No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAGAT648820.15002171409508133No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAGATCGG631220.14595219994928832No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAGATCGGAA631030.14590826769430532No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAGATCG585870.13546626435203185No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAATAAAAAAGATCGG581580.13447432027899478No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAAAAAAAAAAAAAGATCGGA581200.1343864557690288No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAGATCGGAA576670.1333390183212764No Hit
TGCTTCACTTTGAAATGGGAGTGCGTTACAAAAAAAAAAAAAGATCGGAA570080.1318152627405505No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGGAAAAAAAAAAAAAGATCG567690.13126264121734338No Hit
GTCGCGGCGTGGGAAATGTGGCGTACGGAAAAAAAAAAAAAGATCGGAAG564970.1306337163039026No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAAAAAGATCG544280.12584972495864935No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAGATC531590.1229155127705747No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAAGATCGGA518090.11979401044283575No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAGATC503420.11640197791335939No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAATAAAAAGATCGG465540.1076432736041185No Hit
CGGTCGAACTTGACTATCTAGAGGAAGTAAAAAAAAAAAAAGATCGGAAG463640.10720395105428857No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCAAAAAAAAAAAAAGA452300.10458188909898783No Hit
CGCGGCGTGGGAAATGTGGCGTACGAAAAAAAAAAAAAGATCGGAAGAGC447980.10358300835411137No Hit
GTCGCGGCGTGGGAAATGTGGCGTACAAAAAAAAAAAAAGATCGGAAGAG445360.10297720568013535No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAGATC445230.1029471467688312No Hit
TGAATGATTTCACGCTTCCAAGAAAAGCTTAAAAAAAAAAAAAGATCGGA440220.10178872257164807No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAAAAAAAAAAAAGATCGGAAG439270.1015690612967331No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAA435010.10058405389553547No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)