FastQCFastQC Report
Thu 14 Sept 2023
SRR15283617_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15283617_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77773863
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length84
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAGATCGG28218653.6282947652992372No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAGATCGG17549442.2564701460180783No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAGATCG15723322.021671470787043No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAGATCGGA13355301.7171964314026682No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAGATCGGA11387751.4642129837372229No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAGAT10328171.3279744121749488No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAGATCG9859321.2676906636359313No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAGATCGGA9515571.2234920104200044No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAGATC6891210.8860573120818237No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAGATCGGA6755890.8686581506180296No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAGATCG5119530.658258417741189No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAGATCGG4800960.6172973560539227No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAG4714810.6062203699461348No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAGATCGGA4393200.5648684314420642No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAGA4302920.5532604186061839No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAGATCGGA4005140.5149724914654169No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAAAAAGATCGG3823970.4916780332744948No Hit
GCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAGA3695410.4751480584164888No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAAAAAAAAGATCGGAA3489580.44868286920504385No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAGATCG3466080.44566128854882775No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAGATCGGAA3243720.4170707066460104No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAGATCGG2826580.3634357213296709No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAGATC2822720.36293941063464985No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAGATCGG2786970.35834275070019345No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAGA2670640.3433852835624225No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAGATCGG2653080.3411274556337776No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAGATC2636670.33901749229043693No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAGATC2604810.33492100038800954No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAGATCGG2482700.3192203529867097No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAGATCGG2422570.3114889638438044No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAAAAAAAAAAAAAGATCGGAA2359970.30343998728724586No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAGATCG2077790.2671578753906052No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAAAAAGATCG1868950.240305666699364No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAAAAAGATCGGAA1863240.23957148688885363No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAGATC1860460.23921404032611832No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAGATCGG1757720.22600394685294212No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAATAAAAAAGATCGG1602520.2060486567318895No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAGATCGGAA1592330.20473844792819407No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAGATC1569410.2017914424541314No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAGAT1562710.20092997052235917No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAGATCGGAA1542110.1982812657769102No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAAAAAGATCG1520430.19549369689917548No Hit
GTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAAAAAAAAGATCGGAAG1510390.19420277478051978No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAGATCGG1482710.190643738501198No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAGATCGGAA1463260.18814289834105322No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAGATCGGAA1434440.1844372832554299No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAGATCGGAA1400990.18013635249158189No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAAAAAAAAAAAG1350990.1737074574783562No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAATAAAAAAAAGATCG1309560.16838047507039738No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAGATCG1247180.16035978565189696No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAAAAAAAAAAAAAAGATCG1240370.15948417015109562No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAATAAAAAAAGATCG1224600.15745649666392422No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAATAAAAAGATCGG1209550.1555213992649433No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAAAAAAAAAAAAAGATCGGA1159560.1490937900307202No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAATAAAAAAAGATCGG1152940.14824260433096914No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAGAT1143550.14703525784748533No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAGATCG1132640.1456324729555995No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAGATCG1096110.1409355222589368No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAG1054480.13558282427092505No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAATAAAAAAGATCGG1052970.13538867164152565No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAATAAAAAAAAAAGAT1028650.13226165710709265No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAAGA1025120.13180777711915892No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAGAAAAAAAAAAAAAGATC962620.12377165835262677No Hit
GTCGCGGCGTGGGAAATGTGGCGTACGGAAAAAAAAAAAAAGATCGGAAG952510.12247173578095252No Hit
GTCGCGGCGTGGGAAATGTGGCGTACGAAAAAAAAAAAAAGATCGGAAGA942740.12121552969536822No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAGAT938410.12065878738722288No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGAAAAAAAAAAAAAGATCGGA935530.12028848303446107No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAGATCGGA929960.11957230412998772No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAGATCGGAA920620.11837138654151717No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAA899430.11564682083491211No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAATAAAAAAAGATCGG896730.11529966050419793No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAAAAAAAGATCGG874880.11249023338341828No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAGAAAAAAAAAAAAAGAT866770.11144746661227309No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAATAAAAAGATCGGA828750.10655893484421623No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAATAAAAAAGATCG825310.1061166268673063No Hit
CGCGGCGTGGGAAATGTGGCGTACGAAAAAAAAAAAAAGATCGGAAGAGC812290.10444254260586233No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGGAAAAAAAAAAAAAGATCGG805140.10352321061897106No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAGATCGGA790070.10158554166198482No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAAGAT784260.100838504061448No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)