FastQCFastQC Report
Sat 16 Sept 2023
SRR15359351_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15359351_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77112528
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGAT4188461654.316227319119925No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGA32470004.210729545787943No Hit
TTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATAG18706642.425888566381847No Hit
TTTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATA18412292.387717077567474No Hit
ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATA15787352.0473132459099253No Hit
GTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATC12493321.6201414120413742No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAATAGA8942661.159689642129227No Hit
CTGTGTTCAGGTCGCAGTCCTGTAGGCACCATCAATAGATCGGAAGAGCA5936850.7698943549094902No Hit
ATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGATCG4540470.5888109387361805No Hit
ACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCGGAAGAGC4204580.5452525172044678No Hit
NGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGAT3919300.5082572315616471No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATAGA3541760.45929761244502315No Hit
TGTTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGA2390520.310004102057191No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGTTGTAGGCACCATCAATAGAT2033940.263762588615951No Hit
TTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATC1617710.20978562653269517No Hit
ATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGATCGG1527600.1981001063796015No Hit
GGCGCCGGTGAAATACCACTACTCCTACTGTAGGCACCATCAATAGATCG1445100.18740145570120592No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGCTGTAGGCACCATCAATAGATC1357440.17603365305310703No Hit
ATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCGGAAGAGCACAC1348180.17483281056484104No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCGTAGGCACCATCAATAGAT1346900.17466681937855805No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGAGGCACCATCAATAGATC1295690.16802587512109576No Hit
TTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCG1252400.16241200132875944No Hit
TGTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATC1179250.15292586439391534No Hit
GGCGCCGGTGAAATACCACTACTCCTATCTGTAGGCACCATCAATAGATC1115540.14466391245790827No Hit
CTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCGGAAGAGCA1028050.1333181555142376No Hit
TACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCGGAAGAG976910.12668628889977515No Hit
TTTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGAT911730.1182337064607712No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAAT904770.11733112938535745No Hit
TTTGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAG877940.11385179850412894No Hit
TTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCGG870330.11286492902943086No Hit
GTCTAGTGGTATGATTCGCCTGTAGGCACCATCAATAGATCGGAAGAGCA839520.10886946930335367No Hit
TTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATCGGA838560.10874497591364142No Hit
TATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT832860.108005796412225No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)