FastQCFastQC Report
Sat 16 Sept 2023
SRR15359378_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15359378_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45929032
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATA828244218.033129894834275No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGAT40998738.926539100584572No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAATAGA15070513.2812600970993686No Hit
ATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGATCG12298222.67765712980844No Hit
TTTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATA9101691.9816855709042593No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGA6680111.4544417134678562No Hit
TTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATAG6584341.4335899785564825No Hit
GTGTAGCGGTAACATCGTTGACTGTAGGCACCATCAATAGATCGGAAGAG6215761.3533400834574523No Hit
TGTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAG4952461.0782852989368468No Hit
ATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGATCGG3789720.8251251626639986No Hit
TGTAGCGGTAACATCGTTGACTGTAGGCACCATCAATAGATCGGAAGAGC3701860.805995649984524No Hit
TGTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGA3602390.7843383243957764No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAAT3382990.736568974499615No Hit
AGTATCCTTTCATTCTTATGTGGGGGACTGTAGGCACCATCAATAGATCG2613300.5689865181569688No Hit
GTGTAGTTGGTTATCACGTCAGTCTGTAGGCACCATCAATAGATCGGAAG2559380.5572466669883224No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAATAG2373830.51684738315408No Hit
GTTTAGTGGTAAAATCCATCGTCTGTAGGCACCATCAATAGATCGGAAGA2065840.44978957971506994No Hit
ACTATGCCGATTAGGGATCGGACGGTGTCTGTAGGCACCATCAATAGATC1933040.42087540621365593No Hit
TCGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAA1790800.38990588784888824No Hit
TATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT1741730.37922201364923175No Hit
TCTTCCGTAGTATAGTGGTCAGTATGTGAGCCTGTAGGCACCATCAATAG1636290.35626485661618124No Hit
TATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGATC1564360.34060373839361563No Hit
GTCTAGTGGTATGATTCGCCTGTAGGCACCATCAATAGATCGGAAGAGCA1533510.33388685396199946No Hit
GTCTAGTGGTATGATTTCTGTCTGTAGGCACCATCAATAGATCGGAAGAG1505130.3277077557393328No Hit
GATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAATA1475600.32127827122505No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAATAGA1439930.31351194164074697No Hit
AAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGAT1219160.265444305466747No Hit
CGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGAGCCTGTAGGCACCATC1174930.25581423096397937No Hit
GTCTAGTGGTATGATTCTCGCTTCTGTAGGCACCATCAATAGATCGGAAG1136840.24752100153123194No Hit
TCGTCCAACTTCTGGTTTTAAGGTCCTTCTGTAGGCACCATCAATAGATC1135160.24715521981826225No Hit
ATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAATAG1080260.2352019959837168No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCTGTAGGCACCATCAATA1050190.22865493877597945No Hit
TTTAGTGGTAAAATCCATCGTCTGTAGGCACCATCAATAGATCGGAAGAG1044400.22739429822949456No Hit
TCGGGTATGGTGTAGCGGTAACATCGTTGACTGTAGGCACCATCAATAGA1011380.22020494575195923No Hit
GTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAATAGATC979110.21317888868199966No Hit
CGAGAGGACCCAGGTTCGATTCCTGGCAATCCCCTGTAGGCACCATCAAT942030.20510556373145422No Hit
GTGTAGCGGTAACATCGTTGACCTGTAGGCACCATCAATAGATCGGAAGA912970.19877841100591886No Hit
TCGTCCAACTTCTGGTTTTAAGGTCCTCTGTAGGCACCATCAATAGATCG897070.19531654836531281No Hit
TTATATATCAAATCATCTTTATGCTATTCTGTAGGCACCATCAATAGATC893450.19452837586474717No Hit
TCAACAGCCCCGGGTTCGACTCCCGGTATCCGACTGTAGGCACCATCAAT827490.18016708908648457No Hit
TCGAGAGGACCCAGGTTCGATTCCTGGCAATCCCCTGTAGGCACCATCAA819690.17846881684769667No Hit
TAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGAT814410.17731921717836335No Hit
CGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGACTGTAGGCACCATCAA808300.17598890392464617No Hit
ATTAAATCAGTTATAGTTTATTTGATACTGTAGGCACCATCAATAGATCG775610.16887140142644416No Hit
GCTCAGTTGGTAGAGCTTTCGCCTGTAGGCACCATCAATAGATCGGAAGA755630.164521211768626No Hit
ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTTCTGTAGGCACCATCAAT753860.16413583460674722No Hit
CGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGAGCTGTAGGCACCATCA736140.16027770844375733No Hit
AAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGATC728470.15860774074228257No Hit
AATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGATC712590.15515023264587854No Hit
TCGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCTGTAGGCACCATCAAT705690.15364791489618157No Hit
GTGTAGTTGGTTATCACGTCAGCTGTAGGCACCATCAATAGATCGGAAGA704670.15342583314187855No Hit
ACTATGCCGATTAGGGATCGGACGGTGCTGTAGGCACCATCAATAGATCG693970.15109615199379772No Hit
TAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGATC663830.1445338538813533No Hit
ATAGTAGGCAATTTAAGTAACATCTTAGCTGTAGGCACCATCAATAGATC659190.14352359962648462No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGGCTGTAGGCACCATCAAT646460.14075193224189878No Hit
GTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGA631080.13740328775054522No Hit
ATCGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCTGTAGGCACCATCAA628040.13674139703183816No Hit
TTGGGTCGGGCCTTTTTTCCTGGAGAACCGCTGTAGGCACCATCAATAGA610320.13288327086884827No Hit
ATAGTAGGCAATTTAAGTAACATCTTACTGTAGGCACCATCAATAGATCG598960.1304098897621008No Hit
TGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAATAGATCGG594720.1294867263912725No Hit
ATTATATATCAAATCATCTTTATGCTATTCTGTAGGCACCATCAATAGAT588140.12805408134880786No Hit
ACCGGCCGGCGGCTTTCAGCATCCGGGTCTGTAGGCACCATCAATAGATC572030.1245464959940806No Hit
GTCTAGTGGTATGATTTCCCTGTAGGCACCATCAATAGATCGGAAGAGCA568590.12379751439133314No Hit
ATCGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCA561760.12231043754634323No Hit
TGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGACTGTAGGCACCATCAA559440.1218053104189089No Hit
GTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGAT546260.11893566578977759No Hit
ACTGACTGGGTCGGGCCTTTTTTCCTGGACTGTAGGCACCATCAATAGAT535170.11652107102975738No Hit
GCCAAGGATGTTTTCATTAATCAGGAACGACTGTAGGCACCATCAATAGA526250.11457894431565639No Hit
TTGGGTCGGGCCTTTTTTCCTGGAGAACCGCCTGTAGGCACCATCAATAG519910.11319855380361597No Hit
CAGTATCCTTTCATTCTTATGTGGGGGACTGTAGGCACCATCAATAGATC516520.11246045856137356No Hit
GTCTAGTGGTATGATTTCTGCTGTAGGCACCATCAATAGATCGGAAGAGC487360.10611153311482811No Hit
ATAGATGTGCATAGTTAAACCGATCATTACTGTAGGCACCATCAATAGAT486150.10584808319060589No Hit
GTGTAGCGGTAACATCGTTGCTGTAGGCACCATCAATAGATCGGAAGAGC485070.1056129378036968No Hit
AATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAATAGATCG480650.10465058353505033No Hit
TGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGAGCCTGTAGGCACCATC477350.10393208374171699No Hit
CGAGAGGACCCAGGTTCGATTCCTGGCAATCCCTGTAGGCACCATCAATA463170.10084471190248469No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)