FastQCFastQC Report
Sat 16 Sept 2023
SRR15359390_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15359390_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52455351
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT20434573.8956120987542335No Hit
ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT18578883.5418464743472975No Hit
TTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT17241593.286907755130644No Hit
ACGGGGAGGTAGTGACAATAAATACTGACTGTAGGCACCATCAAT10458051.993705084539421No Hit
AGTGAATCATCGAATCTTTGAACGCACCTGTAGGCACCATCAAT8346261.5911169863299552No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT6487191.2367070044007522No Hit
TTTTGACCCGTTCGGCACCTTACGATAAATCCTGTAGGCACCATCAAT5546891.0574497919192267No Hit
ATAGGGAAGTTCCGTTTCAAAGGGGCACCTGTAGGCACCATCAAT4774480.9101988470156266No Hit
TGTGCCCCGTGTGGCGAAAGGGAAGCCGGTTAACCTGTAGGCACCATCAA3486430.6646471586854885No Hit
AATTCTCACGCCAGGTCGTACTCATAACCGCCTGTAGGCACCATCAAT3378440.6440601264873816No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT3067670.5848154557196653No Hit
TTTGACCCGTTCGGCACCTTACGATAAATCCTGTAGGCACCATCAAT2729050.520261507734454No Hit
TATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT2711110.5168414562701144No Hit
TGTGCCCCGTGTGGCGAAAGGGAAGCCGGTTCTGTAGGCACCATCAAT2577600.49138933414057223No Hit
TTGGAATGAGTACAATTTAAATCCCTTAACCTGTAGGCACCATCAAT2561910.4883982188966765No Hit
TATTCTCACGCCAGGTCGTACTCATAACCGCCTGTAGGCACCATCAAT2477520.472310251055226No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT2462920.46952693158034536No Hit
AAAAAACCCCGACTTCGGAAGGGGTGTATTTATTAGATTCTGTAGGCACC2383430.45437309150786165No Hit
TTTTTGACCCGTTCGGCACCTTACGATAAATCCTGTAGGCACCATCAAT2372770.4523408870145584No Hit
ATAGGGAAGTTCCGTTTCAAAGGGGCACTCTGTAGGCACCATCAAT2244480.4278838969164461No Hit
TAGTGAATCATCGAATCTTTGAACGCACCTGTAGGCACCATCAAT2134950.4070032817052354No Hit
TGCAAGGATGCTGGCGTAATGGTCATCCTGTAGGCACCATCAAT2097440.3998524383146345No Hit
AGGTGAGAGCTTCGGCGCATCATCGACCGATCCTGCTGTAGGCACCATCA2060710.3928502928137875No Hit
TAGGACCGCCGTAATGATTAATAGGGACCTGTAGGCACCATCAAT2058130.3923584459476785No Hit
AATTATTGCTCTTCAACGAGGAATCCCTCTGTAGGCACCATCAAT1758040.3351497924396693No Hit
AAAAAACCCCGACTTCGGAAGGGGTGTATTTATTCTGTAGGCACCATCAA1704670.3249754252907392No Hit
AAAATCAGTTATAGTTTATTTGATAGTACCTGTAGGCACCATCAAT1672710.3188826245772333No Hit
AATGCCCTCGCCGGGACCGAGGTTCGCGCATCTGTAGGCACCATCAAT1619880.3088112021212097No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1593550.30379169515041465No Hit
GTGCCCCGTGTGGCGAAAGGGAAGCCGGTTAACCTGTAGGCACCATCAAT1541130.29379843440567194No Hit
AAATACCGGCCAGAGACCGATAGCGCACCTGTAGGCACCATCAAT1539690.2935239152245879No Hit
ATTAAAGTTGTTGAGGTTAAAAAGCTCGTCTGTAGGCACCATCAAT1495840.28516442488393606No Hit
AGCGAAATGCGATAAGTAATGTGAATTGCAGACTGTAGGCACCATCAAT1492170.28446478224881194No Hit
TATTCTCACGCCAGGTCGTACTCATAACCGCAGCCTGTAGGCACCATCAA1446180.2756973259029379No Hit
AGAGGGTGAGAGCCCCGTATAGTCGGATGCCGATCCCTGTAGGCACCATC1354430.2582062600248352No Hit
GTGCCCCGTGTGGCGAAAGGGAAGCCGGTTCTGTAGGCACCATCAAT1296400.24714351830378561No Hit
AAAAACCCCGACTTCGGAAGGGGTGTATTTATTAGATTCTGTAGGCACCA1277750.2435881136321059No Hit
TAGCGAAATGCGATAAGTAATGTGAATTGCAGACTGTAGGCACCATCAAT1272110.2425129135061931No Hit
ACGCCAGGTCGTACTCATAACCGCCTGTAGGCACCATCAAT1260620.24032247920712607No Hit
AAATGTAGATAAGGGAAGTCGGCAAAATCTGTAGGCACCATCAAT1232340.23493122751194628No Hit
ACGCGCTGGATCAAATCCTTTGCCTGTAGGCACCATCAAT1223390.23322501454618041No Hit
AGGACCGCCGTAATGATTAATAGGGACCTGTAGGCACCATCAAT1145000.21828087662591372No Hit
TCTACATGGATAACCGTGGTAATTCTAGAGCTCTGTAGGCACCATCAAT1106720.21098324172876087No Hit
TGCAAGGATGCTGGCGTAATGGTCATCAACCTGTAGGCACCATCAAT1104510.2105619310411249No Hit
AAATACCGGCCAGAGACCGATAGCGCACAAGTCTGTAGGCACCATCAAT1071120.2041965175297369No Hit
AAGTTCCGTTTCAAAGGGGCACCTGTAGGCACCATCAAT1056990.20150279806534893No Hit
ATAAGAATAGGCTCCGGCCTCGTATCTTAGCCTGTAGGCACCATCAAT1042710.19878048285293143No Hit
AAAAAACCCCGACTTCGGAAGGGGTGTATTTATTAGACTGTAGGCACCAT1039010.1980751210682014No Hit
AATTAAACCGCGAAACTGCGAATGGCTCCTGTAGGCACCATCAAT1023280.19507638029149782No Hit
TAATTCTCACGCCAGGTCGTACTCATAACCGCCTGTAGGCACCATCAAT1009000.19235406507908032No Hit
GATACCGTCGTAGTCTTAACCATAAACTCTGTAGGCACCATCAAT972630.18542054937350433No Hit
AATTATTGCTCTTCAACGAGGAATCCCTAGTCTGTAGGCACCATCAAT958090.18264866819783554No Hit
TGGAATGAGTACAATTTAAATCCCTTAACCTGTAGGCACCATCAAT955390.1821339447333028No Hit
TAGCCTTCATCCATTCTCAAACTTTAAATATGTCTGTAGGCACCATCAAT948360.18079375734231576No Hit
TTCATCCATTCTCAAACTTTAAATATGTCTGTAGGCACCATCAAT934670.17818391873881465No Hit
AGAGGGTGAGAGCCCCGTATAGTCGGATGCCGATCCACTGTAGGCACCAT925590.17645292279142313No Hit
AATTTTAACACGCGCTGGATCAAATCCTTTGCCTGTAGGCACCATCAAT894120.17045353485481396No Hit
AAAAACCCCGACTTCGGAAGGGGTGTATTTATTCTGTAGGCACCATCAAT874130.16664267483406983No Hit
AAGGTCTCCGTTGGTGAACCAGCGGAGGGATCCTGTAGGCACCATCAAT867010.16528532999426504No Hit
AGTAAGCGCAAGTCATCAGCTTGCGTTGATTCTGTAGGCACCATCAAT863830.1646791001360376No Hit
AATTCTCACGCCAGGTCGTACTCATAACCGCAGCCTGTAGGCACCATCAA858360.16363630852455835No Hit
AGGGAAGTTCCGTTTCAAAGGGGCACTCTGTAGGCACCATCAAT850640.16216458069263515No Hit
AACGGATCTCTTGGTTCTGGCCTGTAGGCACCATCAAT848600.16177567851943267No Hit
AAATGGCTCAGTGAGGCTTCCGGACTGGCCCTGTAGGCACCATCAAT829620.15815736320208781No Hit
TAGGGAAGTTCCGTTTCAAAGGGGCACTCTGTAGGCACCATCAAT815180.15540454585843871No Hit
AAATGGCTCAGTGAGGCTTCCGGACTGGCCCCTGTAGGCACCATCAAT814390.15525394158548286No Hit
ATAGGGAAGTTCCGTTTCAAAGGGGCACTGTAGGCACCATCAAT791090.15081206872488567No Hit
ATAAGAATAGGCTCCGGCCTCGTATCTTCTGTAGGCACCATCAAT782850.14924120896645987No Hit
AGACGTATAAGAATAGGCTCCGGCCTCGTCTGTAGGCACCATCAAT778510.14841383865680358No Hit
ATCCATTCTCAAACTTTAAATATGTCTGTAGGCACCATCAAT767070.1462329362737464No Hit
AGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT761610.14519205104546912No Hit
ATCCAAACTCGGTCATTTAGAGGAAGTCTGTAGGCACCATCAAT755380.14400437431063992No Hit
GAAATGCGATAAGTAATGTGAATTGCAGACTGTAGGCACCATCAAT752270.1434114891348263No Hit
TATTCTCAAACTTTAAATATGTCTGTAGGCACCATCAAT749700.14292154865191922No Hit
AGGTCTCCAAGGTGAACAGCCTCTGGTTGATCTGTAGGCACCATCAAT744180.1418692251244301No Hit
AACGAGGAATCCCTAGTAAGCGCAAGTCCTGTAGGCACCATCAAT743410.14172243361787817No Hit
TTTTGACCCGTTCGGCACCTTACGATAAATCTGTAGGCACCATCAAT741080.14127824633181846No Hit
TGAAATGCGATAAGTAATGTGAATTGCAGACTGTAGGCACCATCAAT729580.13908590564954945No Hit
TGGTCTTGTAATTGGAATGAGTACAATTTCTGTAGGCACCATCAAT715690.1364379393820089No Hit
ATCGATGAAGAACGCAGCGAAATGCGATCTGTAGGCACCATCAAT714980.13630258617466884No Hit
AAAAATGGGAGGTAAATTTCTTCTAAAGCTCTGTAGGCACCATCAAT704410.1342875391301833No Hit
ATATCAATAAGCGGAGGAAAAGAAACCCTGTAGGCACCATCAAT677230.12910598958722055No Hit
AACTGGTGATTCATAATAACTTCTCGAATCGCCTGTAGGCACCATCAAT659410.1257088147213046No Hit
ATCAATAAGCGGAGGAAAAGAAACCAACCTGTAGGCACCATCAAT659400.12570690833810264No Hit
AGATACCGTCGTAGTCTTAACCATAAACTCTGTAGGCACCATCAAT659160.12566115514125528No Hit
ATGCTCGAATGTACTAGCATGGAATAATCTGTAGGCACCATCAAT656410.12513689976071268No Hit
GAAAAGCACTTTGAAAAGAGGGTTAAATCTGTAGGCACCATCAAT643770.12272723139341876No Hit
AAAAACCCGCACGCGTAATGAAAGTGAACGTCTGTAGGCACCATCAAT643510.12267766543016746No Hit
AAAAAACCCCGACTTCGGAAGGGGTGTATTTATTAGATCTGTAGGCACCA643480.12267194628056155No Hit
AACGAGGAATCCCTAGTAAGCGCAAGTCATCCTGTAGGCACCATCAAT643010.12258234627006881No Hit
ATTCTGGCGAGCATGCCTGTTCGAGCGTCCTGTAGGCACCATCAAT619840.11816525639109726No Hit
ATATCAATAAGCGGAGGAAAAGAAACCAACCTGTAGGCACCATCAAT615290.11729785203419953No Hit
ATCGATGAAGAACGCAGCGAAATGCGATAAGTCTGTAGGCACCATCAAT614120.11707480519956867No Hit
AAAACTTTCAACAACGGATCTCTTGGTTCTGGCCTGTAGGCACCATCAAT585660.11164923860675338No Hit
AAGAATAGGCTCCGGCCTCGTATCTTAGCCTGTAGGCACCATCAAT583570.11125080451754102No Hit
AGAATTCGGTAAGCGTTGGATTGTTCACCCACTCTGTAGGCACCATCAAT581640.11088287255956024No Hit
AAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT556970.10617982520029273No Hit
ATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT555660.10593008900083427No Hit
AAAAGCTAAATACCGGCCAGAGACCGATAGCGCCTGTAGGCACCATCAAT552840.10539248893787784No Hit
AAATTGAGCTTAGTACGAGAGGAACCGCTCATTCCTGTAGGCACCATCAA550940.10503027612950297No Hit
AATTTAAATCCCTTAACGAGGAACAATTCTGTAGGCACCATCAAT544080.10372249725294946No Hit
AGTGAATCATCGAATCTTTGAACGCACATTCTGTAGGCACCATCAAT540480.10303619930023918No Hit
AATGCCCTCGCCGGGACCGAGGTTCGCGCATCCTGTAGGCACCATCAAT536690.10231368006669139No Hit
TGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT531630.10134905016649302No Hit
AAAAGCTAAATACCGGCCAGAGACCGATAGCGCACCTGTAGGCACCATCA531580.10133951825048317No Hit
TTGACCCGTTCGGCACCTTACGATAAATCCTGTAGGCACCATCAAT530080.1010535607701872No Hit
ATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT528720.10079429265471887No Hit
AAAAGAAGGCCTATGCTCGAATGTACTAGCCTGTAGGCACCATCAAT526660.10040157771511243No Hit
TAGGGTTTAATGGCCGGAAGAGCCCGACACTGTAGGCACCATCAAT524760.10003936490673754No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)