FastQCFastQC Report
Sat 16 Sept 2023
SRR15359406_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15359406_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81477852
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT73520699.023395707584436No Hit
TTTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT61312477.525047420248635No Hit
TTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT54496246.688472837992833No Hit
ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT46021325.648322687740958No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT21563722.6465744335037207No Hit
TATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT7121030.8739835213132522No Hit
TGTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT5432930.6667983834429018No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT5213820.6399064128494698No Hit
AAATGGCTCAGTGAGGCTTCCGGACTGGCCCTGTAGGCACCATCAAT5055140.6204311817154924No Hit
TGTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAAT4178790.5128743452883368No Hit
AAATGGCTCAGTGAGGCTTCCGGACTGGCCCCTGTAGGCACCATCAAT4096570.5027832594310414No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAAT3644850.4473424262583653No Hit
TTGGGTCGGGCCTTTTTTCCTGGAGAACCGCTGTAGGCACCATCAAT3158410.38764031236365926No Hit
TGCTTTGATACTTATGGTACCAACATTTACTGTAGGCACCATCAAT3067410.3764716330518875No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAAT3043630.37355304850206406No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCTGTAGGCACCATCAAT2947410.36174370428911157No Hit
AGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT2865640.3517078481646767No Hit
GTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT2802120.3439118645395806No Hit
GCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT2790660.3425053473427355No Hit
GGCGCCGGTGAAATACCACTACTCCTATCTGTAGGCACCATCAAT2515020.30867529497463925No Hit
CGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGACTGTAGGCACCATCAA2411500.2959700017619512No Hit
TGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT2350630.2884992598970331No Hit
GTCTAGTGGTATGATTCTCGCTTCTGTAGGCACCATCAAT2132720.2617545685912289No Hit
GCCAAGGATGTTTTCATTAATCAGGAACGACTGTAGGCACCATCAAT1883630.23118307046189682No Hit
GTTTAGTGGTAAAATCCATCGTCTGTAGGCACCATCAAT1755750.21548800771036525No Hit
GCATAAGCATGGCAGGAAAGCTAAGTTAGTCACTGTAGGCACCATCAAT1723510.21153110418276616No Hit
TGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGACTGTAGGCACCATCAA1574410.19323165269501705No Hit
TCAACAGCCCCGGGTTCGACTCCCGGTATCCGCTGTAGGCACCATCAAT1545220.1896490840234718No Hit
GTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAAT1376590.16895266212958093No Hit
GTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT1368330.1679388896997432No Hit
ATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT1319320.16192375812754614No Hit
TCAACAGCCCCGGGTTCGACTCCCGGTATCCGACTGTAGGCACCATCAAT1243640.15263534438782211No Hit
GAATGGCTCAGTGAGGCTTCCGGACTGGCCCTGTAGGCACCATCAAT1237780.15191613053323988No Hit
GGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT1227410.15064339202265664No Hit
AAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT1212270.1487852183437531No Hit
AGTATCCTTTCATTCTTATGTGGGGGACTGTAGGCACCATCAAT1139310.13983063765598533No Hit
TTGGGTCGGGCCTTTTTTCCTGGAGAACCGCCTGTAGGCACCATCAAT1124830.13805346758527703No Hit
TGAATGGCTCAGTGAGGCTTCCGGACTGGCCCTGTAGGCACCATCAAT1082450.13285205407722334No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAAT1072390.13161736271594396No Hit
GGGTCGGGCCTTTTTTCCTGGAGAACCGCTGTAGGCACCATCAAT1026140.12594097350529074No Hit
TGCTTTGATACTTATGGTACCAACATTTCTGTAGGCACCATCAAT1007980.12371214695252397No Hit
AACCCCGACTTCGGAAGGGGTGTATTTATTAGATTCTGTAGGCACCATCA1001750.12294752198425653No Hit
GAATGGCTCAGTGAGGCTTCCGGACTGGCCCCTGTAGGCACCATCAAT996000.12224180873104018No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCGTAGGCACCATCAAT992570.12182083543390418No Hit
TTTCTGGCGAGCATGCCTGTTCGAGAGTCATTCTGTAGGCACCATCAAT977280.11994425184404714No Hit
TGATCCTTTAGTCCCTCGAAATTTGAGGCTAGAGGTCTGTAGGCACCATC923640.11336086768708631No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)