FastQCFastQC Report
Sat 16 Sept 2023
SRR15359408_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15359408_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89182532
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT67233437.538856376044582No Hit
TTTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT54006536.055729613059204No Hit
ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT42354924.74923945868682No Hit
TTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT40924134.588805574616338No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT24294492.724130999106417No Hit
TGTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT15097371.692861781497749No Hit
TGTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAAT13828201.55055028040693No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCCTGTAGGCACCATCAAT8854660.9928693210908163No Hit
TATTCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT8260470.9262430449945063No Hit
GCCAAGGATGTTTTCATTAATCAGGAACGACTGTAGGCACCATCAAT7557470.8474159491233103No Hit
TCTGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT6089690.6828343918291084No Hit
TTGGGTCGGGCCTTTTTTCCTGGAGAACCGCTGTAGGCACCATCAAT5948180.666966934735605No Hit
CGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGACTGTAGGCACCATCAA5502390.6169806885500851No Hit
TGCTTTGATACTTATGGTACCAACATTTACTGTAGGCACCATCAAT5001600.5608273153760649No Hit
CGATGGGCCCCGCGTTCGATTCGCGGCTGGCGCTGTAGGCACCATCAAT4439050.4977488192418668No Hit
AAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT3666620.4111365665195512No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAAT3653070.40961721068874785No Hit
GTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT3472890.3894137026744206No Hit
GTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAAT3385780.3796460948204521No Hit
AAATGGCTCAGTGAGGCTTCCGGACTGGCCCCTGTAGGCACCATCAAT3168670.3553016413573008No Hit
TGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGACTGTAGGCACCATCAA2766720.31023115602952384No Hit
TGATCCTTTAGTCCCTCGAAATTTGAGGCTAGAGGTCTGTAGGCACCATC2759630.30943615729591534No Hit
GTTTTTTTACTTATTCAATTAAGCGGGGCTGTAGGCACCATCAAT2703610.30315465813417364No Hit
AAATGGCTCAGTGAGGCTTCCGGACTGGCCCTGTAGGCACCATCAAT2639850.29600527601077753No Hit
GCATAAGCATGGCAGGAAAGCTAAGTTAGTCACTGTAGGCACCATCAAT2526730.2833211777391563No Hit
GCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT2452660.2750157396293704No Hit
TCAACAGCCCCGGGTTCGACTCCCGGTATCCGACTGTAGGCACCATCAAT2447710.2744606982004054No Hit
TAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT2363200.2649846272586206No Hit
AGTATCCTTTCATTCTTATGTGGGGGACTGTAGGCACCATCAAT2144030.24040918685735452No Hit
AGGGGTGTATTTATTAGATTAAAAACCACTGTAGGCACCATCAAT1968080.2206799869732337No Hit
TTGTAATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT1927570.21613761762224915No Hit
TTGGGTCGGGCCTTTTTTCCTGGAGAACCGCCTGTAGGCACCATCAAT1698360.19043639622162778No Hit
TGTACCAACACTAGTGGGCCATTTTTGGCTGTAGGCACCATCAAT1694320.18998339271192705No Hit
GGCGCCGGTGAAATACCACTACTCCTATCTGTAGGCACCATCAAT1625520.1822688774972211No Hit
TTGTAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAAT1616900.18130232050375067No Hit
TCAACAGCCCCGGGTTCGACTCCCGGTATCCGCTGTAGGCACCATCAAT1552450.1740755689690443No Hit
TGCTTTGATACTTATGGTACCAACATTTCTGTAGGCACCATCAAT1535030.1721222716574138No Hit
TTGTTTTTTTACTTATTCAATTAAGCGGGGCCTGTAGGCACCATCAAT1479930.1659439317107525No Hit
TGGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT1476220.16552793096298277No Hit
GGCGAGCATGCCTGTTCGAGCGTCATTCTGTAGGCACCATCAAT1372030.1538451498551308No Hit
AACCCCGACTTCGGAAGGGGTGTATTTATTAGATTCTGTAGGCACCATCA1359750.15246819859297112No Hit
GCCAAGGATGTTTTCATTAATCAGGAACGAACTGTAGGCACCATCAAT1304330.1462539771801949No Hit
ATGGATATAAAGCTTATGTTTATATATCTGTAGGCACCATCAAT1284740.14405735867647265No Hit
TAATGGATATAAAGCTTATGTTTATATACTGTAGGCACCATCAAT1252300.1404198750490735No Hit
GAATGGCTCAGTGAGGCTTCCGGACTGGCCCCTGTAGGCACCATCAAT1162280.1303259701126225No Hit
GGGTCGGGCCTTTTTTCCTGGAGAACCGCTGTAGGCACCATCAAT1083620.12150585722325086No Hit
TCGCGTATTGTAATTTTAACACGCGCTGGACTGTAGGCACCATCAAT1052560.11802311241847227No Hit
TTTCTGGCGAGCATGCCTGTTCGAGAGTCATTCTGTAGGCACCATCAAT1047340.11743779600247278No Hit
GAATGGCTCAGTGAGGCTTCCGGACTGGCCCTGTAGGCACCATCAAT1025790.1150214035187967No Hit
TGAATGGCTCAGTGAGGCTTCCGGACTGGCCCCTGTAGGCACCATCAAT1010280.1132822737080396No Hit
GTCTAGTGGTATGATTCTCGCTTCTGTAGGCACCATCAAT997550.11185486413415578No Hit
CGCTCGAGACCCGGGTTCAATTCCCGGCGGGAGAGCCCTGTAGGCACCAT976060.10944519942537627No Hit
TGTTTTTTTACTTATTCAATTAAGCGGGGCCGTAGGCACCATCAAT948310.1063336035357238No Hit
TCTTCCGTAGTATAGTGGTCAGTATGTGAGCCTGTAGGCACCATCAAT934540.1047895791969665No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)