FastQCFastQC Report
Sat 16 Sept 2023
SRR15480788_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15480788_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47475015
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length10-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1275033026.856926743467064No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA23996175.05448392170071No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG12581952.6502255976117124No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATC8661131.824355400414302No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT6027681.269653100688857No Hit
GCCGATTTAGCTCAGCGGTAGAGCAGCTG5902171.2432160368985665No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTG5523601.163475145821439No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG4605530.9700955334084675No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTT2274040.4789972156933494No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2189870.46126789006807056No Hit
GTNGAACCCCATTCGTGATGGGGATCGGGGATT1700660.3582221090398813No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1621180.3414806714647694No Hit
GGCGGGGCGCGGGACATGTGGCGTA1474310.3105443989854453No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT1458030.30711522681983355No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTC1454980.30647278363155867No Hit
AGGACTCTAGAGATACTGCCTGG1440420.30340590729671174No Hit
CGGCCCGGACACGGACAGGATTGACAGA1375790.2897924308186106No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA1310270.2759914873117997No Hit
GGCTCTGTAGCTCAGTAGGTAGAGCAACG1220330.2570467855565712No Hit
AAGAACGAAAGTCGGAGGTTCGAAGACGATC1200570.25288459624499326No Hit
GGACGCTACGCCGCGACGAGTAGGAGGGC1152680.24279718500352238No Hit
TGGGAATACCGGGTGCTGTAGGCTT1087420.22905100714554805No Hit
CGCGACCTCAGATC1082510.22801677893098085No Hit
CAACTTCTTAGAGGGACAAGTGGCGT1030270.21701309625705226No Hit
GACTCGTTAGCTCAGCCGGTAGAGCAACTG1016900.21419687808418808No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC984680.20741015037067392No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT955030.20116476003219796No Hit
ACGGTGGCCATGGAAGTCGGAATCCGCT946430.1993532808783736No Hit
TGCTTAGTTGAACAGGGCCCTGAAGC930230.19594095968163464No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCT907910.19123953936612764No Hit
CAAGTGGTGGAGCATGTGGTTTAATTCG780100.16431801022074455No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTT774670.16317425070850428No Hit
GTTGAACCCCATTCGTGGTGGGGATCGGGGATT719580.1515702522684827No Hit
GCCGTCTTAGCTCAGCTGGCAGAGCAACTG715570.15072559745373434No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG709540.14945545567494817No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT699680.14737857376137745No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGA686300.14456024921740412No Hit
AGACGTGGCGACCCGCTGA685770.14444861154862193No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATA676310.14245598447941513No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGC667880.14068031363444541No Hit
GTTGGACCCCATTCGTGATGGGGATCGGGGATT646800.13624008333646656No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT636010.1339673089097497No Hit
GTGGTGGAGCATGTGGTTTAATTCG629000.1324907427622719No Hit
TAGCTTATCAGACTGATGTTGAC606980.12785251358003782No Hit
CCCCTTGTAAATTTAACTGTTAGTCCA599830.1263464582370327No Hit
CGCGCGCTACACTGACTGGCTCAGCGT594110.12514161396262855No Hit
GTTGAGCCCCATTCGTGATGGGGATCGGGGATT590780.12444019238329888No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGC586840.12361028216631423No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTT580580.1222916938520188No Hit
ATACCACCCTGAACGCGCCCGATCTCGT577330.1216071232415619No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT565640.1191447754150262No Hit
CGGGACATGTGGCGTACGGAAGA561040.11817584470484106No Hit
GGCCCGGACACGGACAGGATTGACAGATT558290.11759659264983907No Hit
GTCGAACCCCATTCGTGATGGGGATCGGGGATT551330.1161305583579068No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG530030.11164398789552778No Hit
ATTGATCATCGACACTTCGAACGCA529240.11147758457790903No Hit
GTTGAACCCCATTCGTGATGGGGGTCGGGGATT524630.11050654749661479No Hit
AGCTGCGAGAATTAATGTGAATTGC509360.10729011881302197No Hit
GCTGAACCCCATTCGTGATGGGGATCGGGGATT508380.10708369444433034No Hit
GCCATGGAAGTCGGAATCCGCT489760.10316163143918963No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTA479440.10098785645460037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)