FastQCFastQC Report
Sat 16 Sept 2023
SRR15480789_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15480789_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39670425
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length10-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATT917168323.11969937302159No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG10317202.6007283763660207No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA8071562.0346542796050207No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATC3993661.0067096583916104No Hit
GCCGATTTAGCTCAGCGGTAGAGCAGCTG3857570.9724045053714448No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT3628240.9145956969203127No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG3516510.8864311385622917No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTT2794900.7045298859288752No Hit
AGGACTCTAGAGATACTGCCTGG2474230.6236963682642674No Hit
AAGAACGAAAGTCGGAGGTTCGAAGACGATC1958280.49363726251987466No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTG1862440.4694782070018156No Hit
CGGCCCGGACACGGACAGGATTGACAGA1770870.4463955200883277No Hit
GGCGGGGCGCGGGACATGTGGCGTA1656310.41751758394320204No Hit
CGCGACCTCAGATC1627910.41035859837649835No Hit
AGACGTGGCGACCCGCTGA1622630.40902763204578724No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1442220.36355042831025886No Hit
TGGGAATACCGGGTGCTGTAGGCTT1429880.3604397986661348No Hit
GGACGCTACGCCGCGACGAGTAGGAGGGC1250970.31534071036546746No Hit
TGCTTAGTTGAACAGGGCCCTGAAGC1114870.2810330365757362No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT1072010.2702290182169715No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT1047200.2639749889243687No Hit
GGCTCTGTAGCTCAGTAGGTAGAGCAACG1019350.2569546456837808No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC986300.2486235022690077No Hit
ACGGTGGCCATGGAAGTCGGAATCCGCT970350.24460287481165127No Hit
CAAGTGGTGGAGC917900.23138143843934117No Hit
AGCTGCGAGAATTAATGTGAATTGC916530.23103609300883465No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTC869000.219054875262869No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA867320.21863138597582454No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT854490.21539723862297921No Hit
CAACTTCTTAGAGGGACAAGTGGCGT820730.20688712056903852No Hit
CGGGACATGTGGCGTACGGAAGA807600.20357735012922093No Hit
TAGCTTATCAGACTGATGTTGAC787460.19850052022381912No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT739400.1863857016908692No Hit
CAAGTGGTGGAGCATGTGGTTTAATTCG733720.18495390457752847No Hit
AAGAGGGCGTGAAACCGTTAAGAGGT705350.17780248131952203No Hit
AAATCGGTCGTCCGACCTGGGTATAGGGGC684150.1724584498401517No Hit
GTGGTGGAGCATGTGGTTTAATTCG682160.1719568166965693No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC637940.1608099736768638No Hit
ACGGTGGCCATGGAAGTC608770.15345688885359812No Hit
GTTTCCGTAGTGTAGTGGTTATC608310.15334093345357402No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGC607970.15325522728833885No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT601540.15163437245756758No Hit
ATACCACCCTGAACGCGCCCGATCTCGT576270.14526438776494074No Hit
GACTCGTTAGCTCAGCCGGTAGAGCAACTG574340.1447778792387528No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC558490.14078245947705376No Hit
GGCCCGGACACGGACAGGATTGACAGATT552910.13937587005937044No Hit
CGCGCGCTACACTGACTGGCTCAGCGT552370.13923974850282042No Hit
GTTGAGCCCCATTCGTGATGGGGATCGGGGATT543290.13695088973712785No Hit
ACCAGGAGTGGAGCCTGCGGCTT537690.13553925878031303No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATG512000.12906340176592512No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCT504690.12722071921336867No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG481540.12138513766867887No Hit
CGGGACATGTGGCGTACGGAAGACC481440.12135992997302147No Hit
GGACGCTACGCCGCGACGAGTAGGAGGG476600.12013987750320294No Hit
AATGTAGGTAAGGGAAGTCGGC460820.11616210312846409No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCT456580.11509329683259002No Hit
GCCATGGAAGTCGGAATCCGCT452360.11402953207584744No Hit
GCTTAGTTGAACAGGGCCCTGAAGC449810.11338673583658354No Hit
AGTGAAACTGCGAATGGCTC438230.11046768467945578No Hit
CGGTCGGCGTCCAACTTCTTAGAGG436760.11009713155329191No Hit
GGCGGGGCGCGGGACATGTGGCGTACG434960.10964339303145858No Hit
GTTGGACCCCATTCGTGATGGGGATCGGGGATT434560.10954256224882894No Hit
CGGGACATGTGGCGTACGGAAG431360.1087359159877919No Hit
TGCATAATTTGTGGTAGTGGGG429460.10825696977030116No Hit
ATCGCATGATGAGTAATAGAAAGGAGCTT428730.10807295359200209No Hit
GTTGAACCCCATTCGTGATGGGGAACGGGGATT412480.10397670304767342No Hit
AGGTCTGTGATGCCCTTAGATGTCCGGGGCTGC412160.10389603842156972No Hit
TGAGGTAGTAGTTTGTGCTGTT410870.10357085914758916No Hit
GATGTCGGCTCTTCCTATC397410.10017790331210215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)