FastQCFastQC Report
Sat 16 Sept 2023
SRR15513148_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513148_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146169387
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN107927517.383728714686338No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN106912977.314320200302954No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN67075244.58887058204602No Hit
AAACCTGCATTAAAAATTTCGGTTGGGNNNNNNNN23365851.5985460758619723No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN19015891.3009488778932896No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATNNNN16669601.140430314591112No Hit
AACCTGCATTAAAAATTTCGGTTGGGNNNNNNNNN15639761.0699750694035544No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN14337370.9808736490083249No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN10194000.697410053447101No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN6127250.4191883215601089No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTNNNN5741680.39281002115716607No Hit
AAGCTTGGGCTGCAGGTCGACCCGNNNNNNNNNNN5684760.38891590891052996No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN5173550.35394210143331856No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN4884060.3341369968254707No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN4392760.3005253076692454No Hit
GCATGCTCATAAGGAAAGGTTAAAANNNNNNNNNN4141070.28330624387170755No Hit
CCCCTTGTAAATTTAACTGTTAGTCCANNNNNNNN3819540.2613091618151207No Hit
AGGCATGCTCATAAGGAAAGGTTAAAANNNNNNNN3434070.23493770278998297No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNNN3323450.22736977066203337No Hit
GCATGCTCATAAGGAAAGGTTAAAAANNNNNNNNN3318700.22704480521629333No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAANNNNNNN3303470.2260028633765838No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAANNNNNNN3095700.2117885327110252No Hit
GAGAGAGACGGGGAGGGCGGCGCCGCCGCNNNNNN3083890.21098056599224846No Hit
AAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACNNN3063430.20958082009333456No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN2986710.20433211504129792No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN2947410.20164345356391214No Hit
AGTTCAACTTTAAATTTGCCCACAGAACNNNNNNN2875720.19673886981546965No Hit
ACACCATGGGAGTGGGTTGCAAAAGAAGTNNNNNN2661650.1820935323481927No Hit
TCCCCTTGTAAATTTAACTGTTAGTCCANNNNNNN2579690.1764863390991713No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNN2503300.17126021059389132No Hit
AGCTGCGAGAATTAATGTGAATTGCAGNNNNNNNN2356810.16123827624726922No Hit
AGGCATGCTCATAAGGAAAGGTTAAAAANNNNNNN2299970.15734963710287708No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN2290700.15671544138034868No Hit
ACCCCATTCGTGATGGGGATCGGGGATTNNNNNNN2264910.1549510500444255No Hit
CCATTCGTGATGGGGATCGGGGATTNNNNNNNNNN2147110.1468919069900731No Hit
CACTCGCCGAATCCCGGGGCCGAGGGNNNNNNNNN2064580.14124571788756288No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN2037460.1393903362268325No Hit
GCTTGAGAGAACTCGGGTGAAGGAACNNNNNNNNN2002740.1370150098529181No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN1914720.13099322910891045No Hit
GGCATGCTCATAAGGAAAGGTTAAAANNNNNNNNN1885110.12896749714083428No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN1837650.12572057923455612No Hit
ATAAAGTATAGCGATAGAAATTGAAACNNNNNNNN1750400.11975147709964741No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN1741730.11915832964394932No Hit
AAGCTTGGGCTGCAGGTCGACCCNNNNNNNNNNNN1698160.11617754133428773No Hit
CGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNNN1642000.11233542355896997No Hit
ATAAAGTATAGGCGATAGAAATTGAAACNNNNNNN1635540.11189347055276355No Hit
GAAGGTGTGCTGTGAGGCATGCTGGAGGTNNNNNN1617970.11069144047241575No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTANNNNN1605840.10986158134466283No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCNNN1596160.10919933597313368No Hit
TTAACCAGTGAAATTGACCTGCCCGTGANNNNNNN1590140.10878748502926949No Hit
ACCTATTCTCAAACTTTAAATGGGTAAGAANNNNN1573280.10763402873133757No Hit
AGCCTGGTGATAGCTGGTTGTCCAAGANNNNNNNN1544310.10565208158121372No Hit
AGGAAAGGTTAAAAAAAGTAAAAGGAANNNNNNNN1533060.10488242657814527No Hit
TAGCTGCGAGAATTAATGTGAATTGCNNNNNNNNN1515720.10369613166674907No Hit
AAGCCAGCTTGACTGCGAGCGTGACGGCGCNNNNN1480910.10131464805281012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)