FastQCFastQC Report
Sat 16 Sept 2023
SRR15513155_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513155_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95744067
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN75084617.842220656868483No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN41051404.287618156015871No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN39154884.089535908266775No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN23864742.4925554917152204No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN22281442.327187542597287No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN19280662.0137707331776498No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN17770581.8560502553124258No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN15850661.6555239918939313No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN15808211.6510902968013674No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN13567281.4170361073130515No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGANNN11920141.2450003821124498No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGN9364040.978028226020522No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN8890620.9285818201142427No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNNN6002410.6269223971862403No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNN5496720.5741055474486998No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN4609350.48142408657029373No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN4360970.4554820091358768No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNN4211470.4398674645813823No Hit
AGCCCGTGGACGGTGTGAGGCCGGTNNNNNNNNNN3586600.3746028461481587No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGANN3183440.33249475395692146No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNN2917300.3046977312964991No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNNN2769610.28927223239848376No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNN2726150.2847330477407023No Hit
ACGCCGGGTTAAGGCGCCCGATGCCGACGCTNNNN2685960.2805353986059523No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTN2655450.2773487781754665No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGANNNN2256900.23572217796012365No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN2243080.23427874648358107No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNN2215750.2314242615158598No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGNNNNNN2209860.23080907979394694No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN2205070.2303087876975186No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN2154440.2250207315718059No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNNN2065580.21573973873493385No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNNN1991290.20798051121016198No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTNNNN1832460.1913914937413302No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNNN1745340.18229223540295192No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNN1668990.17431785094318167No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGNNNNNNNN1643070.1716106335863088No Hit
GCGACCGGCTCCGGGACGGCTGGGNNNNNNNNNNN1538370.16067523014245885No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGNNN1523770.1591503314769363No Hit
CGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNNN1516130.15835237080538891No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGNNNNN1480210.15460070230774717No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNNN1460230.152513888928491No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGANNNNN1441060.1505116760916371No Hit
ACGCCGGGTTAAGGCGCCCGATGCCGACGCTCNNN1428120.1491601563154822No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN1370690.14316187341404665No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNNN1324770.13836575377563604No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNN1317520.13760852669857862No Hit
ACCGCCTGGGAATACCAGGTGCTGTAGGCTTNNNN1252810.13084988336666334No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTNNNNN1236780.12917562818801084No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCNNN1202130.12555660498524676No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN1176460.1228754989068931No Hit
AGATCAGACGTGGCGACCCGCTGANNNNNNNNNNN1142710.11935047630679821No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTNNNNNNNN1135070.1185525156352508No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNN1102210.11512044918668433No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN1096340.114507356367053No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNN1094980.11436531101190846No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGANNNNNN1090620.11390993031453321No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN1081000.11290516831711359No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNN1064360.1111672016188742No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGNNNNN1064210.11115153485176266No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGNNNN1058580.1105635088595098No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNN1020520.10658832781774352No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNN1002730.10473024923831573No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATNNNN991350.10354166384012077No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTNNNNNNNNN978620.10221207753792201No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNNNN966790.10097649183839245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)