FastQCFastQC Report
Sat 16 Sept 2023
SRR15513156_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513156_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85717131
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC60

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN59140566.899502970998878No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN40010124.667692389284471No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN35133114.098726776098001No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN21872642.5517232955452043No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN21743442.536650462554562No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN17186522.005027443114026No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN16107951.8791984533406747No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN14465451.6875798141214033No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN12911441.5062846655471938No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN12349911.4407750068069825No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGANNN10602351.2368997744453207No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN8771891.0233531964573102No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGN7351500.8576465304234226No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNNN5457650.6367046979208858No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNN4981570.5811638749318383No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN4173680.48691317025064684No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN3868760.4513403510903789No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNN3848830.44901526160505767No Hit
AGCCCGTGGACGGTGTGAGGCCGGTNNNNNNNNNN3179140.3708873550609154No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGANN2814540.3283521003520288No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNN2661380.3104840268160632No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNNN2505250.29226946478178323No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNN2463610.28741162603774034No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTN2438650.2844997226983717No Hit
ACGCCGGGTTAAGGCGCCCGATGCCGACGCTNNNN2404610.28052852118907246No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN2071020.24161097972352807No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGANNNN2047210.2388332385973114No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNN1995760.23283093784368494No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN1987610.23188013607221641No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGNNNNNN1963190.22903123064163217No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNNN1871240.21830408672917434No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNNN1842380.21493719849302936No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN1727350.2015174772940079No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATTNNNN1669730.1947953671011224No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNN1626580.18976136753807124No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNNN1564050.18246644302642373No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGNNNNNNNN1477960.1724229430870709No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGNNN1395430.16279476269451904No Hit
GCGACCGGCTCCGGGACGGCTGGGNNNNNNNNNNN1390110.16217411663019846No Hit
CGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNNN1371060.15995169040363705No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGNNNNN1334980.15574249679448557No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNNN1333580.15557916888282228No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGANNNNN1296100.15120664736200748No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNNN1286810.1501228500053274No Hit
ACGCCGGGTTAAGGCGCCCGATGCCGACGCTCNNN1279420.14926071195733326No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNN1175050.13708461614283382No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN1137840.13274359357641125No Hit
ACCGCCTGGGAATACCAGGTGCTGTAGGCTTNNNN1125150.1312631427199774No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTNNNNN1109740.1294653690637406No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN1079520.1259398194276941No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCNNN1060580.12373022610847767No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTNNNNNNNN1042630.12163612895536599No Hit
AGATCAGACGTGGCGACCCGCTGANNNNNNNNNNN1029160.12006468111957691No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNN1016570.11859589654254761No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN1008950.11770692605192302No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN994670.11604098135295732No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGANNNNNN976250.1138920526866444No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNN960130.11201144844663548No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGNNNNN956930.11163812750569078No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNN938050.10943553395411705No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGNNNN937060.10932003778801229No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNN932610.10880088835451107No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNN892910.1041693754309159No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTNNNNNNNNN887190.10350206424897726No Hit
ACTCTTAGCGGTGGATCACTCGGCTCGTGCGNNNN874490.10202044676460298No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNNNN872700.10181162036326204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)